RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 MAGEH1Q9H213 219 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 NDST4Q9H3R1 872 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 SEMA6CQ9H3T2 930 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 DPEP2Q9H4A9 486 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 NOL6Q9H6R4 1146 aaKnown RBP6.64□□□□□ -1.35
CD44-221ENST00000526000 RDH14Q9HBH5 336 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 PCDH12Q9NPG4 1184 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 GPATCH2LQ9NWQ4 482 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 NCKIPSDQ9NZQ3 722 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 FOXJ2Q9P0K8 574 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 LRIT1Q9P2V4 623 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 KLQ9UEF7 1012 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 SSUH2Q9Y2M2 353 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 RNF215Q9Y6U7 377 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 AHCTF1Q8WYP5 2266 aa6.64□□□□□ -1.35
CD44-221ENST00000526000 SYCE3A1L190 88 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 TMEM202A6NGA9 273 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 RASA4BC9J798 803 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 D6RAR5 112 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 J3KR12 359 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 RASA4O43374 803 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 B4GAT1O43505 415 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 IGSF6O95976 241 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 GSRP00390 522 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ITGA2BP08514 1039 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ALPIP09923 528 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 CHRNB2P17787 502 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ITGB6P18564 788 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 HTR1BP28222 390 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 EPHB2P29323 1055 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 SDC4P31431 198 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 CDH5P33151 784 aaPredicted RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 CSRP3P50461 194 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 BLKP51451 505 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 MAZP56270 477 aaKnown RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 YPEL5P62699 121 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 TPM4P67936 248 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 NOMO3P69849 1222 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 MYL5Q02045 173 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 NFATC4Q14934 902 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 CLCA4Q14CN2 919 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 IGFBP7Q16270 282 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 MAN2A1Q16706 1144 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 SKIDA1Q1XH10 827 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 DPCR1Q3MIW9 517 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 TMEM52BQ4KMG9 183 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 CFAP58Q5T655 872 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 NKAIN2Q5VXU1 208 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 WDR59Q6PJI9 974 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 IGF2-ASQ6U949 168 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 MACC1Q6ZN28 852 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ATG14Q6ZNE5 492 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ZSWIM9Q86XI8 627 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 CCNJLQ8IV13 435 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 PELI3Q8N2H9 469 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 FSTL5Q8N475 847 aaPredicted RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 RCBTB1Q8NDN9 531 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 DENND6BQ8NEG7 585 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ANKRD20A12PQ8NF67 263 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 FAM172AQ8WUF8 416 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 SNRNP27Q8WVK2 155 aaKnown RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 HTR3CQ8WXA8 447 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 GRAMD1AQ96CP6 724 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 ARHGEF26Q96DR7 871 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 PDXPQ96GD0 296 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 LIN37Q96GY3 246 aaPredicted RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 TMEM74Q96NL1 305 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 PCDHB18PQ96TA0 734 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 TUBGCP2Q9BSJ2 902 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 LGR4Q9BXB1 951 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 C1QTNF7Q9BXJ2 289 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 SUV39H2Q9H5I1 410 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 CYP4F12Q9HCS2 524 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 NLRC4Q9NPP4 1024 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 SAMSN1Q9NSI8 373 aaKnown RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 SEPT11Q9NVA2 429 aaKnown RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 TMEM248Q9NWD8 314 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 TAB2Q9NYJ8 693 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 PPARGC1AQ9UBK2 798 aaKnown RBP6.63□□□□□ -1.35
CD44-221ENST00000526000 LHX3Q9UBR4 397 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 PCDHB11Q9Y5F2 797 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 PIEZO2Q9H5I5 2752 aa6.63□□□□□ -1.35
CD44-221ENST00000526000 UNC13CQ8NB66 2214 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 A0A0U1RQS6 177 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 GTPBP10A4D1E9 387 aaKnown RBP6.62□□□□□ -1.35
CD44-221ENST00000526000 GOLGA6CA6NDK9 693 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 GOLGA6BA6NDN3 693 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 TMEM110-MUSTN1A8MSY1 372 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 A8MU76 341 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 C9orf172C9J069 976 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 RIOK3O14730 519 aaKnown RBP6.62□□□□□ -1.35
CD44-221ENST00000526000 RECQL5O94762 991 aaPredicted RBP6.62□□□□□ -1.35
CD44-221ENST00000526000 GOLGA6DP0CG33 693 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 KRT3P12035 628 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 UCHL3P15374 230 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 EEF1GP26641 437 aaKnown RBP6.62□□□□□ -1.35
CD44-221ENST00000526000 AK4P27144 223 aaPredicted RBP6.62□□□□□ -1.35
CD44-221ENST00000526000 RFC1P35251 1148 aaPredicted RBP6.62□□□□□ -1.35
CD44-221ENST00000526000 RGRP47804 291 aa6.62□□□□□ -1.35
CD44-221ENST00000526000 MAPKAPK2P49137 400 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms