RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 MFAP3LO75121 409 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 MYF5P13349 255 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 XPAP23025 273 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 KDELR1P24390 212 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 IGFALSP35858 605 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 ACADVLP49748 655 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 LIG3P49916 1009 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 CLDN6P56747 220 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 HNRNPKP61978 463 aaKnown RBP eCLIP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 YPEL5P62699 121 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 POLR2LP62875 67 aaKnown RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 ELP6Q0PNE2 266 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 RALGDSQ12967 914 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 PDE1CQ14123 709 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 KRT81Q14533 505 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 IHHQ14623 411 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 INPP5AQ14642 412 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 MESDQ14696 234 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 PDK2Q15119 407 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 INAVAQ3KP66 663 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 ANKRD20A8PQ5CZ79 823 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 SARM1Q6SZW1 724 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 PTAR1Q7Z6K3 402 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 LRRC49Q8IUZ0 686 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 TEX26Q8N6G2 289 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 PQLC3Q8N755 202 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 DENND6BQ8NEG7 585 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 OR4C6Q8NH72 309 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 CTNNBL1Q8WYA6 563 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 RAPGEF5Q92565 580 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 FUBP1Q96AE4 644 aaKnown RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 CCDC42Q96M95 316 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 TSGA13Q96PP4 275 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 NUDCD1Q96RS6 583 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 TCEAL2Q9H3H9 227 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 ATP13A3Q9H7F0 1226 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 NOD2Q9HC29 1040 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 SPTLC3Q9NUV7 552 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 DNAJC28Q9NX36 388 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 RCOR3Q9P2K3 495 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 PCDHGC4Q9Y5F7 938 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 CSNK1G3Q9Y6M4 447 aa9.41□□□□□ -0.9
HDAC3-215ENST00000519474 TPRP12270 2363 aaKnown RBP9.41□□□□□ -0.9
HDAC3-215ENST00000519474 KNTC1P50748 2209 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 LY6G6EA0A0G2JKS1 128 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TMEM8BA6NDV4 472 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 NEMP2A6NFY4 417 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 AKR1B15C9JRZ8 316 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-215ENST00000519474 K7ESM1 405 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TOR1BO14657 336 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 ZNF500O60304 480 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-215ENST00000519474 GCATO75600 419 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 NEBLO76041 1014 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 CDK4P11802 303 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 C6P13671 934 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 NME1P15531 152 aaKnown RBP9.4□□□□□ -0.9
HDAC3-215ENST00000519474 JUNDP17535 347 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 GM2AP17900 193 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 ACP1P24666 158 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 CCNCP24863 283 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 SERPINA4P29622 427 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TERF1P54274 439 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 MAXP61244 160 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 AP1S1P61966 158 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 LRRC14Q15048 493 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TCEAL1Q15170 157 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 PTPRRQ15256 657 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 MARC1Q5VT66 337 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 NCBP2-AS2Q69YL0 99 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 NYAP1Q6ZVC0 841 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TMPRSS12Q86WS5 348 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 GALNT15Q8N3T1 639 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TC2NQ8N9U0 490 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 LRRN4Q8WUT4 740 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 SPOCK2Q92563 424 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 FAF2Q96CS3 445 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 RNF157Q96PX1 679 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 MGME1Q9BQP7 344 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 APOOQ9BUR5 198 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 TRIM5Q9C035 493 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 CLPBQ9H078 707 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 RBSNQ9H1K0 784 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 DEF6Q9H4E7 631 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 ATP8A1Q9Y2Q0 1164 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 PPIL1Q9Y3C6 166 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 U3KQA8 63 aa9.4□□□□□ -0.9
HDAC3-215ENST00000519474 COL5A1P20908 1838 aaPredicted RBP9.4□□□□□ -0.91
HDAC3-215ENST00000519474 TP53BP1Q12888 1972 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 C3orf70A6NLC5 250 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 SRRM3A6NNA2 597 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 TMEM110-MUSTN1A8MSY1 372 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MATN3O15232 486 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 FFAR2O15552 330 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 LZTS3O60299 673 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 RFPL3O75679 317 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 RECQL5O94762 991 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MTA2O94776 668 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MAP3K6O95382 1288 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PDHA1P08559 390 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms