RNA–Protein interactions for RNA: ENST00000516913.1

SCARNA20.3-201, small Cajal body-specific RNA 20, humanhuman

BASIC

Gene SCARNA20, Length 131 nt, Biotype scaRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA20.3-201ENST00000516913 B8ZZF3 427 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 C9orf172C9J069 976 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 D6RAR5 112 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 J3QKU1 62 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TRAFD1O14545 582 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TM7SF2O76062 418 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 FGFR1OPO95684 399 aaKnown RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 ERCC5P28715 1186 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 SOX5P35711 763 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 MMP12P39900 470 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 RECQLP46063 649 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 GSCP56915 257 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TMPRSS3P57727 454 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 BPIFB4P59827 614 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 B4GALNT1Q00973 533 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 C16orf72Q14CZ0 275 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 NCAPHQ15003 741 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 UGP2Q16851 508 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TAF1BQ53T94 588 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 FAXCQ5TGI0 409 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 SMYD5Q6GMV2 418 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 STRADAQ7RTN6 431 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 RD3Q7Z3Z2 195 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 PHF13Q86YI8 300 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 SLITRK4Q8IW52 837 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 UMODL1-AS1Q8N2C9 162 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 PGBD5Q8N414 524 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 Q8N9G6 341 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 PATE1Q8WXA2 126 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 RAB7BQ96AH8 199 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 ECHDC3Q96DC8 303 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TBC1D31Q96DN5 1066 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 WBP1Q96G27 269 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 PPP1R16AQ96I34 528 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 CCDC114Q96M63 670 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 KCTD15Q96SI1 283 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 IL12RB2Q99665 862 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 CPEB1Q9BZB8 566 aaKnown RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 DPH1Q9BZG8 443 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 EDEM3Q9BZQ6 932 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TRIM4Q9C037 500 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 TMEM168Q9H0V1 697 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 SEMA6CQ9H3T2 930 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 SUV39H2Q9H5I1 410 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 USP29Q9HBJ7 922 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 LMBRD1Q9NUN5 540 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 FANCLQ9NW38 375 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 SPASTQ9UBP0 616 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 IPO11Q9UI26 975 aaKnown RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 DAAM1Q9Y4D1 1078 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 RNF215Q9Y6U7 377 aa8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 ARHGEF17Q96PE2 2063 aaPredicted RBP8.34□□□□□ -1.07
SCARNA20.3-201ENST00000516913 LRP4O75096 1905 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 CXorf51AA0A1B0GTR3 108 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 SIGLEC16A6NMB1 481 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 NEMP1O14524 444 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 PLD2O14939 933 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 TEX33O43247 280 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 ATMINO43313 823 aaPredicted RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 PRAMEF11O60813 436 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 EML2O95834 649 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 RPLP0P05388 317 aaKnown RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 ALPPL2P10696 532 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 KRT3P12035 628 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 CCL4P13236 92 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 SDC4P31431 198 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 TRIM23P36406 574 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 POLD2P49005 469 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 PAPOLAP51003 745 aaKnown RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 DUSP3P51452 185 aaPredicted RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 SRP54P61011 504 aaKnown RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 SNRPD1P62314 119 aaKnown RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 YPEL5P62699 121 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 RHDQ02161 417 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 PPARDQ03181 441 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 MTA1Q13330 715 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 HLTFQ14527 1009 aaKnown RBP eCLIP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 NFATC4Q14934 902 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 CLCA4Q14CN2 919 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 LRRC14Q15048 493 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 AGERQ15109 404 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 SYCP1Q15431 976 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 INO80DQ53TQ3 878 aaPredicted RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 CERCAMQ5T4B2 595 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 TXNRD3NBQ6F5E7 133 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 ENPP7Q6UWV6 458 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 LIPIQ6XZB0 460 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 IRF2BP2Q7Z5L9 587 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 C17orf82Q86X59 251 aaPredicted RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 DTX1Q86Y01 620 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 CPNE8Q86YQ8 564 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 LSMEM2Q8N112 164 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 WDR36Q8NI36 951 aaKnown RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 EXTL1Q92935 676 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 MED8Q96G25 268 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 LIN37Q96GY3 246 aaPredicted RBP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 RBM15Q96T37 977 aaKnown RBP eCLIP8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 PDCL3Q9H2J4 239 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 LRRN3Q9H3W5 708 aa8.33□□□□□ -1.08
SCARNA20.3-201ENST00000516913 THSD1Q9NS62 852 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms