RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SKOR1P84550 965 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ZNF284Q2VY69 593 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 TMEM259Q4ZIN3 620 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 TRIM61Q5EBN2 209 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ITPRIPL1Q6GPH6 555 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ZSWIM9Q86XI8 627 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 SLC35F6Q8N357 371 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ZCCHC9Q8N567 271 aaKnown RBP14.36□□□□□ -0.11
NUP54-216ENST00000514901 C12orf50Q8NA57 414 aaPredicted RBP14.36□□□□□ -0.11
NUP54-216ENST00000514901 FAM174AQ8TBP5 190 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 SERAC1Q96JX3 654 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 PPP1R2P1Q96PQ5 205 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ORAI3Q9BRQ5 295 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 C1QTNF7Q9BXJ2 289 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 C1QTNF2Q9BXJ5 285 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ADGRE3Q9BY15 652 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 SLC17A9Q9BYT1 436 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ZDHHC5Q9C0B5 715 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 HOMER3Q9NSC5 361 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 ZFR2Q9UPR6 939 aaKnown RBP14.36□□□□□ -0.11
NUP54-216ENST00000514901 PPIL1Q9Y3C6 166 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 HS3ST3A1Q9Y663 406 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 TNRC6BQ9UPQ9 1833 aaKnown RBP14.36□□□□□ -0.11
NUP54-216ENST00000514901 TCRBV7S2A1N4TA0A589 114 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 IGLON5A6NGN9 336 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 ENC1O14682 589 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 KCNN4O15554 427 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 SPINT1O43278 529 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 CEP104O60308 925 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 FZD6O60353 706 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 TM7SF2O76062 418 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 CFIP05156 583 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 MMP2P08253 660 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 CYP2A6P11509 494 aaPredicted RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 MAT2AP31153 395 aaKnown RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 AKT2P31751 481 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 STIP1P31948 543 aaKnown RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 MMP12P39900 470 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 GRIA4P48058 902 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 EPHB1P54762 984 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 FAM193AP78312 1265 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 OVGP1Q12889 678 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 STAT4Q14765 748 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 SEL1L3Q68CR1 1132 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 NAPEPLDQ6IQ20 393 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 PRR23CQ6ZRP0 262 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 USP45Q70EL2 814 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 DPPA4Q7L190 304 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 ZNF567Q8N184 647 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.35□□□□□ -0.11
NUP54-216ENST00000514901 SLC35B2Q8TB61 432 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 PIH1D2Q8WWB5 315 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 TADA1Q96BN2 335 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 SCRN2Q96FV2 425 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 LENG8Q96PV6 779 aaPredicted RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 FCRL5Q96RD9 977 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 NAP1L3Q99457 506 aaPredicted RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 TDRD1Q9BXT4 1180 aaKnown RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 CEP41Q9BYV8 373 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 EBF2Q9HAK2 575 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 USP29Q9HBJ7 922 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 PCDH9Q9HC56 1237 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 CAPN10Q9HC96 672 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 TM9SF3Q9HD45 589 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 PARD6AQ9NPB6 346 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 KCTD5Q9NXV2 234 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 FAM153AQ9UHL3 310 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 DNPEPQ9ULA0 475 aa14.35□□□□□ -0.11
NUP54-216ENST00000514901 ATXN2Q99700 1313 aaKnown RBP14.35□□□□□ -0.11
NUP54-216ENST00000514901 DOCK9Q9BZ29 2069 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 C5orf60A6NFR6 353 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 USP27XA6NNY8 438 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 SLC31A1O15431 190 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 MAGEC1O60732 1142 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 OPHN1O60890 802 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 PAK4O96013 591 aaPredicted RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 EPOP01588 193 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 FGGP02679 453 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 HNRNPA2B1P22626 353 aaKnown RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 CD38P28907 300 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 CD68P34810 354 aaPredicted RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 TNNT3P45378 269 aaPredicted RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 GNG11P61952 73 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 IRX4P78413 519 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 LMNB2Q03252 620 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 CCDC6Q16204 474 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 CCNG2Q16589 344 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 LRRC73Q5JTD7 316 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 CCDC70Q6NSX1 233 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 IL27RAQ6UWB1 636 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 IQCHQ86VS3 1027 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 MFSD2AQ8NA29 543 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 DENND6BQ8NEG7 585 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 SPATA13Q96N96 652 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 MCCC1Q96RQ3 725 aaPredicted RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 SRPK1Q96SB4 655 aaKnown RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 RBM15Q96T37 977 aaKnown RBP eCLIP14.34□□□□□ -0.113e-11■■■■■ 43.2
NUP54-216ENST00000514901 FAM118BQ9BPY3 351 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 AASDHPPTQ9NRN7 309 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 GGT7Q9UJ14 662 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms