RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 FAM72CH0Y354 149 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 BUB1O43683 1085 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 TMCC1O94876 653 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 XPAP23025 273 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 CD82P27701 267 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 ARSDP51689 593 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 ATP11AP98196 1134 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 AMZ1Q400G9 498 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 MAP9Q49MG5 647 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 C14orf28Q4W4Y0 310 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 FAM72AQ5TYM5 149 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 FAM72DQ6L9T8 149 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 GBP6Q6ZN66 633 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 BNIPLQ7Z465 357 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 NLRP14Q86W24 1093 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 FAM72BQ86X60 149 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 ZNF354CQ86Y25 554 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 IRF2BP1Q8IU81 584 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 PLA2G15Q8NCC3 412 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 CCL4L1Q8NHW4 92 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 NKD1Q969G9 470 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 GDAP1L1Q96MZ0 367 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 TTYH3Q9C0H2 523 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 DPEP2Q9H4A9 486 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 MAN2B2Q9Y2E5 1009 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 NBPF19A0A087WUL8 3843 aa20.49■□□□□ 0.87
SQSTM1-215ENST00000514093 CXorf51AA0A1B0GTR3 108 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM202A6NGA9 273 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 STMND1H3BQB6 276 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 B4GAT1O43505 415 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 PIGNO95427 931 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 PNLIPP16233 465 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 RHOQP17081 205 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 PON1P27169 355 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 GABRB2P47870 512 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 B4GALNT1Q00973 533 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 RAD51Q06609 339 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 PAK1Q13153 545 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 HLTFQ14527 1009 aaKnown RBP eCLIP20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 FOXR2Q6PJQ5 311 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 EMC1Q8N766 993 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM35BQ8NCS4 154 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 MAGEH1Q9H213 219 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 ZNF71Q9NQZ8 489 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 DKK3Q9UBP4 350 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 DNAJC12Q9UKB3 198 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 SDK2Q58EX2 2172 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 LRRK1Q38SD2 2015 aa20.48■□□□□ 0.87
SQSTM1-215ENST00000514093 KDELR3O43731 214 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 RAMP2O60895 175 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 IGSF6O95976 241 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 PRKCGP05129 697 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 LIFP15018 202 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 CASRP41180 1078 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 MAPKAPK2P49137 400 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 LIG3P49916 1009 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 OR1D5P58170 312 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 RHOAP61586 193 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 EXOC3L4Q17RC7 722 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 MANEALQ5VSG8 457 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 PIM3Q86V86 326 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 IL22RA1Q8N6P7 574 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 ATL2Q8NHH9 583 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 HMCESQ96FZ2 354 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 EXOC2Q96KP1 924 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 TIGD1Q96MW7 591 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 NUDT22Q9BRQ3 303 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 KLC2Q9H0B6 622 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM168Q9H0V1 697 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 FGF22Q9HCT0 170 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 PCDH12Q9NPG4 1184 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM248Q9NWD8 314 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 AKAP7Q9P0M2 348 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 TMEM59LQ9UK28 342 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 DGKBQ9Y6T7 804 aa20.47■□□□□ 0.87
SQSTM1-215ENST00000514093 CLEC18AA5D8T8 446 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 FGF3P11487 239 aaPredicted RBP20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 ALDH4A1P30038 563 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 SCNN1AP37088 669 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 ATP1A2P50993 1020 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 MAZP56270 477 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 ELP6Q0PNE2 266 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 CDO1Q16878 200 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 C4orf17Q53FE4 359 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 EFHC2Q5JST6 749 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 TAF3Q5VWG9 929 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 SPECC1LQ69YQ0 1117 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 CLEC18BQ6UXF7 455 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 CLEC18CQ8NCF0 446 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 OR56A4Q8NGH8 313 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 FUBP1Q96AE4 644 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 SIX2Q9NPC8 291 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 NEU3Q9UQ49 428 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 DAAM1Q9Y4D1 1078 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 UTP20O75691 2785 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 NBASA2RRP1 2371 aa20.46■□□□□ 0.87
SQSTM1-215ENST00000514093 NUDT21O43809 227 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-215ENST00000514093 CPNE6O95741 557 aa20.45■□□□□ 0.86
SQSTM1-215ENST00000514093 ADRA1BP35368 520 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms