RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CD69Q07108 199 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 MPP3Q13368 585 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 STIM1Q13586 685 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 MAPRE1Q15691 268 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 CFAP221Q4G0U5 840 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 CCDC40Q4G0X9 1142 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 COBLL1Q53SF7 1204 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 HSP90AA4PQ58FG1 418 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 RNF187Q5TA31 235 aaPredicted RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 KRT39Q6A163 491 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ARMC6Q6NXE6 501 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 DRICH1Q6PGQ1 229 aaPredicted RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 VSTM1Q6UX27 236 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 UNQ6494/PRO21346Q6UXR6 183 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ZNF852Q6ZMS4 543 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 DENND5BQ6ZUT9 1274 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 RRAGAQ7L523 313 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 GPRIN1Q7Z2K8 1008 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 XYLT1Q86Y38 959 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ZC3H3Q8IXZ2 948 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 NUP93Q8N1F7 819 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 CRYBG2Q8N1P7 616 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ZMIZ2Q8NF64 920 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 PJA1Q8NG27 643 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 SPATA18Q8TC71 538 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 CSGALNACT1Q8TDX6 532 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 NDRG1Q92597 394 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 TAF4BQ92750 862 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 KAT5Q92993 513 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 WBP2Q969T9 261 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 CYFIP2Q96F07 1278 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 FUBP3Q96I24 572 aaKnown RBP eCLIP4.77□□□□□ -1.65
NUP54-206ENST00000508465 SPATA17Q96L03 361 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 C8orf48Q96LL4 319 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 DEPDC7Q96QD5 511 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 GCNAQ96QF7 691 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 MED15Q96RN5 788 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 SRPK1Q96SB4 655 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 SMOQ99835 787 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 DUSP26Q9BV47 211 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 POFUT1Q9H488 388 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 EBF3Q9H4W6 596 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 LMAN1LQ9HAT1 526 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 FBRSL1Q9HCM7 1045 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 CISHQ9NSE2 258 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 RBM12Q9NTZ6 932 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 LMBRD1Q9NUN5 540 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 GTSE1Q9NYZ3 720 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 GCNT4Q9P109 453 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 PIAS3Q9Y6X2 628 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 LAMA1P25391 3075 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 ZFHX2Q9C0A1 2572 aaPredicted RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 TRAV19A0A0A6YYK7 116 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 ANTXRLA6NF34 631 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 UNC119BA6NIH7 251 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 TULP2O00295 520 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 CHADO15335 359 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 SLC16A3O15427 465 aaKnown RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 STX10O60499 249 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 PCDH8O95206 1070 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 ASLP04424 464 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FAM200BP0CF97 657 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 XPAP23025 273 aaPredicted RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 HSD3B2P26439 372 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FLT3P36888 993 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 AVPR1AP37288 418 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FMO5P49326 533 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 MXI1P50539 228 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 RAD23BP54727 409 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 KRTAP10-9P60411 292 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 CSTF1Q05048 431 aaKnown RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 LRRC63Q05C16 580 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FCHO2Q0JRZ9 810 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 PON2Q15165 354 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 ANGPT1Q15389 498 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 ITPRIPL2Q3MIP1 535 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 TSSK4Q6SA08 328 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 UNC93AQ86WB7 457 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 CCDC105Q8IYK2 499 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 CELF5Q8N6W0 485 aaKnown RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 CDYL2Q8N8U2 506 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 SLC4A11Q8NBS3 891 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FAM98AQ8NCA5 519 aaKnown RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 CCDC150Q8NCX0 1101 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FBXL13Q8NEE6 735 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 UBA3Q8TBC4 463 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 GPT2Q8TD30 523 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 BPIFB1Q8TDL5 484 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FAM3CQ92520 227 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 FBXO32Q969P5 355 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 SLC35C1Q96A29 364 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 TNIP3Q96KP6 325 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 ELF4Q99607 663 aaPredicted RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 HNRNPABQ99729 332 aaKnown RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 CRACR2AQ9BSW2 395 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 DDX23Q9BUQ8 820 aaKnown RBP4.76□□□□□ -1.65
NUP54-206ENST00000508465 IMPG2Q9BZV3 1241 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 CLSTN2Q9H4D0 955 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 CYP3A43Q9HB55 503 aa4.76□□□□□ -1.65
NUP54-206ENST00000508465 LTB4R2Q9NPC1 389 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms