RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ESCO2Q56NI9 601 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 DCAF6Q58WW2 860 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 KLHL35Q6PF15 583 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 PATL1Q86TB9 770 aaKnown RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 PALB2Q86YC2 1186 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 ARHGAP12Q8IWW6 846 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 RPAP2Q8IXW5 612 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZNF548Q8NEK5 533 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 GABPB2Q8TAK5 448 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM163Q8TC26 289 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 SCFD2Q8WU76 684 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 LPAR1Q92633 364 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 SNAPC3Q92966 411 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 FBXL8Q96CD0 374 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 WDFY2Q96P53 400 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 FTOQ9C0B1 505 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 SPRTNQ9H040 489 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 KAT14Q9H8E8 782 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 POLR1BQ9H9Y6 1135 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 KIF9Q9HAQ2 790 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 MAGEE1Q9HCI5 957 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 SIRT3Q9NTG7 399 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 NSMCE4AQ9NXX6 385 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 PLK2Q9NYY3 685 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 ADAM18Q9Y3Q7 739 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 RSF1Q96T23 1441 aaPredicted RBP4.21□□□□□ -1.73
HMGB1P28-201ENST00000507778 A0A0U1RQF3 1178 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 FAM237AA0A1B0GTK4 181 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 BCAT2O15382 392 aaPredicted RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 KLK8O60259 260 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 IPO7O95373 1038 aaKnown RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SYF2O95926 243 aaKnown RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 TMEM191BP0C7N4 346 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 ETFAP13804 333 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 AGAP20933 346 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 FBLP22087 321 aaKnown RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 MYF6P23409 242 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 TBXAS1P24557 533 aaPredicted RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SHMT1P34896 483 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SELENOVP59797 346 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 CEBPZQ03701 1054 aaKnown RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 NIPAL4Q0D2K0 466 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 KLF9Q13886 244 aaPredicted RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 CRYMQ14894 314 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 PTGR1Q14914 329 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 DRAP1Q14919 205 aaPredicted RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SHBQ15464 509 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 ALG11Q2TAA5 492 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 COL28A1Q2UY09 1125 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 DCAF12L2Q5VW00 463 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SARM1Q6SZW1 724 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 TRILQ7L0X0 811 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 NOXA1Q86UR1 476 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 TMEM199Q8N511 208 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 WDTC1Q8N5D0 677 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 PARP16Q8N5Y8 322 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SLC25A28Q96A46 364 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 MMABQ96EY8 250 aaPredicted RBP4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 NLRP4Q96MN2 994 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 CMTM3Q96MX0 182 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 ZNF570Q96NI8 536 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 MSTO1Q9BUK6 570 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 CCDC68Q9H2F9 335 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 VPS28Q9UK41 221 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 SLC45A1Q9Y2W3 748 aa4.21□□□□□ -1.74
HMGB1P28-201ENST00000507778 A0A1W2PQF6 199 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 MS4A18H0YCH9 400 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 PPEF2O14830 753 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 RGS11O94810 467 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 FGF2P09038 288 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 TM4SF1P30408 202 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 HADHAP40939 763 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 ENTPD1P49961 510 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 PLCD1P51178 756 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 MRPS21P82921 87 aaKnown RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 CUL4AQ13619 759 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 ETFDHQ16134 617 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 PRTGQ2VWP7 1150 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 RILPL1Q5EBL4 403 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 SGO1Q5FBB7 561 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 COLEC12Q5KU26 742 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 TMEM154Q6P9G4 183 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 LCTLQ6UWM7 567 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 CTU1Q7Z7A3 348 aaKnown RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 SFTPA2Q8IWL1 248 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 MB21D2Q8IYB1 491 aaPredicted RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 C7orf57Q8NEG2 295 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 RSRC1Q96IZ7 334 aaKnown RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 SLITRK1Q96PX8 696 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 TKTL2Q9H0I9 626 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 FOXP1Q9H334 677 aaPredicted RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 SMARCAD1Q9H4L7 1026 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 SH2D4AQ9H788 454 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 CATSPERBQ9H7T0 1116 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 CYSLTR2Q9NS75 346 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 RRP7BPQ9NSQ0 103 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 POT1Q9NUX5 634 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 ABI3Q9P2A4 366 aa4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 CNOT8Q9UFF9 292 aaKnown RBP4.2□□□□□ -1.74
HMGB1P28-201ENST00000507778 TBC1D29Q9UFV1 150 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms