RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 TBC1D3KA0A087X1G2 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3FA6NER0 549 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3LB9A6J9 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 MAP3K7O43318 606 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TSPAN6O43657 245 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 FZD6O60353 706 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3HP0C7X1 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 NFKB1P19838 968 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 XPAP23025 273 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 ABL2P42684 1182 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 CCR5P51681 352 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 RPL26P61254 145 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 NHLH1Q02575 133 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 SNX1Q13596 522 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 CYP1B1Q16678 543 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 FAM182AQ5T1J6 154 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 ARMC12Q5T9G4 340 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 KIAA0895LQ68EN5 471 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3GQ6DHY5 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3CQ6IPX1 549 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 SYT10Q6XYQ8 523 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 ZSCAN30Q86W11 494 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 SLC41A1Q8IVJ1 513 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TMEFF1Q8IYR6 380 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TBC1D3Q8IZP1 549 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 FAM71DQ8N9W8 422 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 CCDC110Q8TBZ0 833 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 RBM15Q96T37 977 aaKnown RBP eCLIP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 TDRD1Q9BXT4 1180 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 GBA3Q9H227 469 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 C6orf106Q9H6K1 298 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 VPS45Q9NRW7 570 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 RNF14Q9UBS8 474 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 PHTF1Q9UMS5 762 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 RPL26L1Q9UNX3 145 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 SMG5Q9UPR3 1016 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 ZNF148Q9UQR1 794 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 PPIL1Q9Y3C6 166 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 PCDHB9Q9Y5E1 797 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 ZFC3H1O60293 1989 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 CABIN1Q9Y6J0 2220 aa11.99□□□□□ -0.49
PDLIM5-208ENST00000504489 RIF1Q5UIP0 2472 aaKnown RBP11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 FAM47DPA6NHR8 397 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 SPINT1O43278 529 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 LATO43561 262 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 CPP00450 1065 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PRLP01236 227 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 TUBB4AP04350 444 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PDHA1P08559 390 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 NFKBIAP25963 317 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 DHPSP49366 369 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 ELP6Q0PNE2 266 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 P3H1Q32P28 736 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 TMEM52BQ4KMG9 183 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 LAIR1Q6GTX8 287 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 TRIM69Q86WT6 500 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 CREG2Q8IUH2 290 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 KLHDC8BQ8IXV7 354 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 DEFB119Q8N690 84 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PAF1Q8N7H5 531 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 C12orf50Q8NA57 414 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 SPATA22Q8NHS9 363 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PDCD6IPQ8WUM4 868 aaKnown RBP11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PIH1D2Q8WWB5 315 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 DNASE2BQ8WZ79 361 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 WNT2BQ93097 391 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 BIRC7Q96CA5 298 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 FEM1CQ96JP0 617 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 C16orf45Q96MC5 204 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 HSPA12BQ96MM6 686 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PPP1R2P1Q96PQ5 205 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PCDH9Q9HC56 1237 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PCDH12Q9NPG4 1184 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 FAM153AQ9UHL3 310 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 RSPH14Q9UHP6 348 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 CHKBQ9Y259 395 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 GPR179Q6PRD1 2367 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 PCDH15Q96QU1 1955 aa11.98□□□□□ -0.49
PDLIM5-208ENST00000504489 KIF2AO00139 706 aaPredicted RBP11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 RNGTTO60942 597 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 ANXA9O76027 345 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 PCDH8O95206 1070 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 MT-CYBP00156 380 aaPredicted RBP11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 EPOP01588 193 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 LMNAP02545 664 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 IGHV4-34P06331 123 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 NUDT1P36639 197 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 MMP12P39900 470 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 DPP6P42658 865 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 PTGER3P43115 390 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 GEMP55040 296 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 GDF10P55107 478 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 RPS21P63220 83 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 LMNB2Q03252 620 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 CDK18Q07002 472 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 MPP3Q13368 585 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 PRPSAP1Q14558 356 aa11.97□□□□□ -0.49
PDLIM5-208ENST00000504489 PARP6Q2NL67 630 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms