RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SLC8A1P32418 973 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ZBTB16Q05516 673 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 SFSWAPQ12872 951 aaKnown RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 RALGPS1Q5JS13 557 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ANKRD20A2Q5SQ80 823 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 CFAP58Q5T655 872 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ANKRD20A1Q5TYW2 823 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ANKRD20A3Q5VUR7 823 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 DRICH1Q6PGQ1 229 aaPredicted RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 NCEH1Q6PIU2 408 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 GSTA5Q7RTV2 222 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 RASSF3Q86WH2 238 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 TMEFF1Q8IYR6 380 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ZNF567Q8N184 647 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 DEFB124Q8NES8 71 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 TMIEQ8NEW7 156 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 KIF18AQ8NI77 898 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 CCDC110Q8TBZ0 833 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 PPP1R16AQ96I34 528 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 TEKT5Q96M29 485 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 SPATA13Q96N96 652 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 KLHL32Q96NJ5 620 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 TUBGCP5Q96RT8 1024 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 PABPC3Q9H361 631 aaKnown RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 CCDC86Q9H6F5 360 aaKnown RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 ATP13A3Q9H7F0 1226 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 USP29Q9HBJ7 922 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 NOD2Q9HC29 1040 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 GLOD4Q9HC38 313 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 TMEM9BQ9NQ34 198 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 EBF1Q9UH73 591 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 RSPH14Q9UHP6 348 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 TRHDEQ9UKU6 1024 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 SARDHQ9UL12 918 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 PPM1HQ9ULR3 514 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 SCML1Q9UN30 329 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 A0A1W2PP55 124 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 C5orf60A6NFR6 353 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 F5H423 210 aaPredicted RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 PDE2AO00408 941 aaPredicted RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 IFNB1P01574 187 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 NTRK1P04629 796 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 SERPINF2P08697 491 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 NFKB1P19838 968 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CES1P23141 567 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 STIP1P31948 543 aaKnown RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 CD68P34810 354 aaPredicted RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 ACTN2P35609 894 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CD86P42081 329 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 KCNJ1P48048 391 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 GDF10P55107 478 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 BCL2L1Q07817 233 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 NIPAL4Q0D2K0 466 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CYP1B1Q16678 543 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 ZNF805Q5CZA5 627 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 ALG1LQ6GMV1 187 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 ITPRIPL1Q6GPH6 555 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 GDPD4Q6W3E5 623 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 ARHGEF18Q6ZSZ5 1173 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 RAB44Q7Z6P3 723 aaPredicted RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 CAMK1DQ8IU85 385 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 ZNF843Q8N446 348 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 HDDC3Q8N4P3 179 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CCDC89Q8N998 374 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 ARRDC2Q8TBH0 407 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 PDCD6IPQ8WUM4 868 aaKnown RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 ARRDC3Q96B67 414 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 OMDQ99983 421 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CPEB1Q9BZB8 566 aaKnown RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 SLC25A51Q9H1U9 297 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 GBA3Q9H227 469 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 SLC32A1Q9H598 525 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CLMPQ9H6B4 373 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 FBXL12Q9NXK8 326 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 DKK4Q9UBT3 224 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 CDC23Q9UJX2 597 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 DRG1Q9Y295 367 aaKnown RBP10.12□□□□□ -0.79
NUP54-203ENST00000504173 NCKAP1Q9Y2A7 1128 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 PCNX2A6NKB5 2137 aa10.12□□□□□ -0.79
NUP54-203ENST00000504173 UPK3BL1B0FP48 263 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 ESPNB1AK53 854 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 UPK3BL2E5RIL1 263 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 PLK4O00444 970 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 SOCS5O75159 536 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 ZNF217O75362 1048 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 GCATO75600 419 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 RNASEH2AO75792 299 aaKnown RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 C7P10643 843 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 CA4P22748 312 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 XPAP23025 273 aaPredicted RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 ITGB7P26010 798 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 COILP38432 576 aaPredicted RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 FNTAP49354 379 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 TPMTP51580 245 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 METAP1P53582 386 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 SKOR1P84550 965 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 CKAP4Q07065 602 aaKnown RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 CCDC15Q0P6D6 951 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 CNTN1Q12860 1018 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms