RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 B4DGG1 531 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 GOLGA6L22H0YM25 854 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 SULT1E1P49888 294 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 MLLT10P55197 1068 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 OR1D5P58170 312 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 SNRPD1P62314 119 aaKnown RBP16.61■□□□□ 0.25
VIM-208ENST00000497849 PNOCQ13519 176 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 AMZ1Q400G9 498 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 TMEM52BQ4KMG9 183 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 ATXN7L2Q5T6C5 722 aaPredicted RBP16.61■□□□□ 0.25
VIM-208ENST00000497849 FOXR2Q6PJQ5 311 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 IRF2BP1Q8IU81 584 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 C1orf131Q8NDD1 294 aaKnown RBP16.61■□□□□ 0.25
VIM-208ENST00000497849 OR1E3Q8WZA6 343 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 CCDC74BQ96LY2 380 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 ZYG11BQ9C0D3 744 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 UBE2TQ9NPD8 197 aaPredicted RBP16.61■□□□□ 0.25
VIM-208ENST00000497849 MRPL40Q9NQ50 206 aaKnown RBP16.61■□□□□ 0.25
VIM-208ENST00000497849 NDFIP2Q9NV92 336 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 RRN3Q9NYV6 651 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 CELSR2Q9HCU4 2923 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 TMEM202A6NGA9 273 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 PRR19A6NJB7 356 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 RAD1O60671 282 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 UQCRFS1P47985 274 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 DEUP1Q05D60 604 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 KLRB1Q12918 225 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 POLD3Q15054 466 aaPredicted RBP16.6■□□□□ 0.25
VIM-208ENST00000497849 CCDC40Q4G0X9 1142 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 PTPN20Q4JDL3 420 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 LACTB2Q53H82 288 aaPredicted RBP16.6■□□□□ 0.25
VIM-208ENST00000497849 SPECC1LQ69YQ0 1117 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 LEKR1Q6ZMV7 388 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 CCL4L1Q8NHW4 92 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 SPATA20Q8TB22 786 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 TBCBQ99426 244 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 INTS2Q9H0H0 1204 aaKnown RBP16.6■□□□□ 0.25
VIM-208ENST00000497849 TMEM168Q9H0V1 697 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 DPEP2Q9H4A9 486 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 FGF22Q9HCT0 170 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.6■□□□□ 0.25
VIM-208ENST00000497849 PCDHGC3Q9UN70 934 aa16.6■□□□□ 0.25
VIM-208ENST00000497849 CRYBG3Q68DQ2 2970 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 ABCA12Q86UK0 2595 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 CAPN5O15484 640 aaPredicted RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 KRT7P08729 469 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 PRKAR1AP10644 381 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 OAS2P29728 719 aaKnown RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 MAZP56270 477 aaKnown RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 RNASE9P60153 205 aaKnown RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 CDC20Q12834 499 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 ACBD5Q5T8D3 534 aaPredicted RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 ZNF438Q7Z4V0 828 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 C17orf82Q86X59 251 aaPredicted RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 PLA2G15Q8NCC3 412 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 ATL2Q8NHH9 583 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 GPT2Q8TD30 523 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 ART4Q93070 314 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 FUBP1Q96AE4 644 aaKnown RBP16.59■□□□□ 0.25
VIM-208ENST00000497849 CEP63Q96MT8 703 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 DDA1Q9BW61 102 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 RMND1Q9NWS8 449 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 DKK3Q9UBP4 350 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 STAP1Q9ULZ2 295 aa16.59■□□□□ 0.25
VIM-208ENST00000497849 K7EM74 188 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 AGFG2O95081 481 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 F9P00740 461 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 PCCBP05166 539 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 RNF224P0DH78 156 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 NR1D1P20393 614 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 CD1CP29017 333 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 ALDH4A1P30038 563 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 LIMK2P53671 638 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 NR1D2Q14995 579 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 AGERQ15109 404 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 CLPPQ16740 277 aaPredicted RBP16.58■□□□□ 0.24
VIM-208ENST00000497849 GJB7Q6PEY0 223 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 NETO2Q8NC67 525 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 OR56A4Q8NGH8 313 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 APOBEC4Q8WW27 367 aaKnown RBP16.58■□□□□ 0.24
VIM-208ENST00000497849 HAPLN3Q96S86 360 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 SPRY4Q9C004 299 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 OCIAD1Q9NX40 245 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 PPARGC1AQ9UBK2 798 aaKnown RBP16.58■□□□□ 0.24
VIM-208ENST00000497849 PILRAQ9UKJ1 303 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 TP53TG5Q9Y2B4 290 aa16.58■□□□□ 0.24
VIM-208ENST00000497849 LOC101059948A0A1B0GTJ6 334 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 PTMSP20962 102 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 GEMIN4P57678 1058 aaKnown RBP16.57■□□□□ 0.24
VIM-208ENST00000497849 MTM1Q13496 603 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 DEFB109BQ30KR1 87 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 SLC25A52Q3SY17 297 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 BNIPLQ7Z465 357 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 GDAP1L1Q96MZ0 367 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 TTYH3Q9C0H2 523 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 GPN2Q9H9Y4 310 aaPredicted RBP16.57■□□□□ 0.24
VIM-208ENST00000497849 SPATS2LQ9NUQ6 558 aaKnown RBP16.57■□□□□ 0.24
VIM-208ENST00000497849 SLC39A1Q9NY26 324 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 MFHAS1Q9Y4C4 1052 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 DOPEY1Q5JWR5 2465 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms