RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 TRIM61Q5EBN2 209 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 SEL1L3Q68CR1 1132 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 USP45Q70EL2 814 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 ALYREFQ86V81 257 aaKnown RBP12.55□□□□□ -0.4
TRA2A-209ENST00000494255 C12orf50Q8NA57 414 aaPredicted RBP12.55□□□□□ -0.4
TRA2A-209ENST00000494255 SLC35B2Q8TB61 432 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 ATG4AQ8WYN0 398 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 SPOCK2Q92563 424 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 KLK6Q92876 244 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 SERAC1Q96JX3 654 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 NAP1L3Q99457 506 aaPredicted RBP12.55□□□□□ -0.4
TRA2A-209ENST00000494255 TDRD1Q9BXT4 1180 aaKnown RBP12.55□□□□□ -0.4
TRA2A-209ENST00000494255 PCDH9Q9HC56 1237 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 AASDHPPTQ9NRN7 309 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 KCND1Q9NSA2 647 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 GGT7Q9UJ14 662 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 DNPEPQ9ULA0 475 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 ZFR2Q9UPR6 939 aaKnown RBP12.55□□□□□ -0.4
TRA2A-209ENST00000494255 CHKBQ9Y259 395 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 ZKSCAN5Q9Y2L8 839 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 TRPM6Q9BX84 2022 aa12.55□□□□□ -0.4
TRA2A-209ENST00000494255 IGLON5A6NGN9 336 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 C10orf142B7Z368 130 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SLC31A1O15431 190 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SPINT1O43278 529 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 LIASO43766 372 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 OPHN1O60890 802 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 MMP2P08253 660 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 CYP2A6P11509 494 aaPredicted RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ITIH2P19823 946 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 CD68P34810 354 aaPredicted RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 MMP12P39900 470 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 RPL26P61254 145 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 RACK1P63244 317 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 TMEM259Q4ZIN3 620 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ANKRD20A2Q5SQ80 823 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 FAM182AQ5T1J6 154 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ANKRD20A1Q5TYW2 823 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ANKRD20A3Q5VUR7 823 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 DPPA4Q7L190 304 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 LPCAT1Q8NF37 534 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 C1orf54Q8WWF1 131 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 TRIM44Q96DX7 344 aaPredicted RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 IFT43Q96FT9 208 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SPATA13Q96N96 652 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 FCRL5Q96RD9 977 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 OSBPL9Q96SU4 736 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 TMEM121Q9BTD3 319 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 WRAP53Q9BUR4 548 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 C1QTNF7Q9BXJ2 289 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ADGRE3Q9BY15 652 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SLC17A9Q9BYT1 436 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SMOC1Q9H4F8 434 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 USP29Q9HBJ7 922 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 TM9SF3Q9HD45 589 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 FAM153AQ9UHL3 310 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 RPL26L1Q9UNX3 145 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ZNF148Q9UQR1 794 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PATE3B3GLJ2 98 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PRAMEF26H0Y7S4 382 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 MMP20O60882 483 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PMPCBO75439 489 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 TM7SF2O76062 418 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PDHA1P08559 390 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ELFN1P0C7U0 828 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PRLRP16471 622 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 HNRNPA2B1P22626 353 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 AKT2P31751 481 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 AFF3P51826 1226 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SNX1Q13596 522 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PRPSAP1Q14558 356 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SF3A2Q15428 464 aaKnown RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PCSK7Q16549 785 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 CCNG2Q16589 344 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 NAPEPLDQ6IQ20 393 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 CCDC70Q6NSX1 233 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SLC23A3Q6PIS1 610 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 ARHGEF18Q6ZSZ5 1173 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 FAM71DQ8N9W8 422 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SPATA22Q8NHS9 363 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 C1orf216Q8TAB5 229 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PIH1D2Q8WWB5 315 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SKA1Q96BD8 255 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PPP1R2P1Q96PQ5 205 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 NAPGQ99747 312 aaPredicted RBP12.54□□□□□ -0.4
TRA2A-209ENST00000494255 C1QTNF2Q9BXJ5 285 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 GBA3Q9H227 469 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 EBF2Q9HAK2 575 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PARD6AQ9NPB6 346 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 HOMER3Q9NSC5 361 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 UBP1Q9NZI7 540 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 B4GALT6Q9UBX8 382 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SNX12Q9UMY4 172 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 SLC6A14Q9UN76 642 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 PLXNA2O75051 1894 aa12.54□□□□□ -0.4
TRA2A-209ENST00000494255 GON4LQ3T8J9 2241 aa12.53□□□□□ -0.4
TRA2A-209ENST00000494255 CTAGE9A4FU28 777 aa12.53□□□□□ -0.4
TRA2A-209ENST00000494255 C5orf60A6NFR6 353 aa12.53□□□□□ -0.4
TRA2A-209ENST00000494255 F5H423 210 aaPredicted RBP12.53□□□□□ -0.4
TRA2A-209ENST00000494255 PGRMC1O00264 195 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms