RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 TSHRP16473 764 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PGAM1P18669 254 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 HSD17B3P37058 310 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 EPHB1P54762 984 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 POU6F1Q14863 301 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 KYNUQ16719 465 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 HSF5Q4G112 596 aaPredicted RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PCID2Q5JVF3 399 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 CFAP58Q5T655 872 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 UBAP2Q5T6F2 1119 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 STEAP4Q687X5 459 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 DENND2CQ68D51 928 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 SDE2Q6IQ49 451 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 BRAT1Q6PJG6 821 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 DSG4Q86SJ6 1040 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 CCNJLQ8IV13 435 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 ZNF687Q8N1G0 1237 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PAF1Q8N7H5 531 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 TXNDC5Q8NBS9 432 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PPHLN1Q8NEY8 458 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 HCAR2Q8TDS4 363 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PTCD2Q8WV60 388 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 UBLCP1Q8WVY7 318 aaPredicted RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 CFAP36Q96G28 342 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 SHDQ96IW2 340 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 KLHL32Q96NJ5 620 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 RANBP9Q96S59 729 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 FAM129BQ96TA1 746 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 NAT9Q9BTE0 207 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 EPB41L4BQ9H329 900 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PABPC3Q9H361 631 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 MRM3Q9HC36 420 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 DKK3Q9UBP4 350 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 ZC3H7BQ9UGR2 993 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 FBXL21Q9UKT6 434 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 PPM1HQ9ULR3 514 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 SOX13Q9UN79 622 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 TCAF1Q9Y4C2 921 aa11.47□□□□□ -0.57
MCF2L-231ENST00000494043 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 TCF20Q9UGU0 1960 aaKnown RBP11.47□□□□□ -0.57
MCF2L-231ENST00000494043 A0A0J9YYE9 177 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 MAGEB16A2A368 324 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 HEATR9A2RTY3 570 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 CAPN8A6NHC0 703 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 C1QTNF3-AMACRE9PGA6 284 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 ADAM23O75077 832 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SPAG6O75602 509 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SLC34A2O95436 690 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 ACSL3O95573 720 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 TRBC1P01850 177 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PRKCGP05129 697 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 ABHD2P08910 425 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 GSTA2P09210 222 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PIRTP0C851 137 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 HOXB2P14652 356 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 ADRA1DP25100 572 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 ITGB7P26010 798 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SLC8A1P32418 973 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 STARD6P59095 220 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 GPX6P59796 221 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 LAMB3Q13751 1172 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SEPT6Q14141 434 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 LRRC32Q14392 662 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 STARD3Q14849 445 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 ZNF805Q5CZA5 627 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PKN3Q6P5Z2 889 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 UNC5AQ6ZN44 842 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PALM2Q8IXS6 379 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 GJD3Q8N144 294 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SIX5Q8N196 739 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 RPLP0P6Q8NHW5 317 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PIP4K2CQ8TBX8 421 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 BLOC1S5Q8TDH9 187 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SMIM14Q96QK8 99 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 TRIM56Q9BRZ2 755 aaKnown RBP11.46□□□□□ -0.57
MCF2L-231ENST00000494043 KIFC1Q9BW19 673 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 FBRSQ9HAH7 460 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PLAC1Q9HBJ0 212 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 LRRC4CQ9HCJ2 640 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 LTB4R2Q9NPC1 389 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.46□□□□□ -0.57
MCF2L-231ENST00000494043 HACD3Q9P035 362 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SARDHQ9UL12 918 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PHTF1Q9UMS5 762 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 MRPS17Q9Y2R5 130 aaKnown RBP11.46□□□□□ -0.57
MCF2L-231ENST00000494043 PPIL1Q9Y3C6 166 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 SPO11Q9Y5K1 396 aa11.46□□□□□ -0.57
MCF2L-231ENST00000494043 CKAP5Q14008 2032 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 ANKRD36A6QL64 1941 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 FAM237BA0A1B0GVD1 139 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 A0A1W2PQF6 199 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 MROH6A6NGR9 719 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 C16orf96A6NNT2 1141 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 UPK3BL1B0FP48 263 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 UPK3BL2E5RIL1 263 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 KPNA3O00505 521 aaPredicted RBP11.45□□□□□ -0.58
MCF2L-231ENST00000494043 RNASEH1O60930 286 aaKnown RBP11.45□□□□□ -0.58
MCF2L-231ENST00000494043 USP1O94782 785 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 IL1BP01584 269 aa11.45□□□□□ -0.58
MCF2L-231ENST00000494043 POLBP06746 335 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms