RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	TAF1B	Q53T94	588 aa	Predicted RBP	18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	CFAP58	Q5T655	872 aa		18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	HID1	Q8IV36	788 aa		18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	ANKRD20A12P	Q8NF67	263 aa		18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	WDR36	Q8NI36	951 aa	Known RBP	18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	SUV39H2	Q9H5I1	410 aa		18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	LRRC19	Q9H756	370 aa		18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	LMBRD1	Q9NUN5	540 aa		18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	LIMA1	Q9UHB6	759 aa	Known RBP	18.58	■□□□□ 0.56
HDAC6-231	ENST00000488905	TMEM110-MUSTN1	A8MSY1	372 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	NTN3	O00634	580 aa	Predicted RBP	18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	RASGRP1	O95267	797 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	HTR1B	P28222	390 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	MLLT3	P42568	568 aa	Predicted RBP	18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	CFHR1	Q03591	330 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	TCEA2	Q15560	299 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	ERAP2	Q6P179	960 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	DCUN1D2	Q6PH85	259 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	FOXR1	Q6PIV2	292 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	BRAT1	Q6PJG6	821 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	ARL14	Q8N4G2	192 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	SCG3	Q8WXD2	468 aa	Known RBP	18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	TSACC	Q96A04	125 aa	Predicted RBP	18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	CCDC97	Q96F63	343 aa	Predicted RBP	18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	ERGIC2	Q96RQ1	377 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	EDEM3	Q9BZQ6	932 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	DONSON	Q9NYP3	566 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	SIRPG	Q9P1W8	387 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	SSUH2	Q9Y2M2	353 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	ATP8A1	Q9Y2Q0	1164 aa		18.57	■□□□□ 0.56
HDAC6-231	ENST00000488905	CCDC187	A0A096LP49	1063 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905		J3KR12	359 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	PRAMEF11	O60813	436 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	PCCB	P05166	539 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	CTSE	P14091	401 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	PLA2G2A	P14555	144 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	LIG3	P49916	1009 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	NDST2	P52849	883 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	MYL5	Q02045	173 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	OGDH	Q02218	1023 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	UBXN1	Q04323	297 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	VAC14	Q08AM6	782 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	INPP5A	Q14642	412 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	AGER	Q15109	404 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	LVRN	Q6Q4G3	990 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	ENPP7	Q6UWV6	458 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	CLEC17A	Q6ZS10	378 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	CLEC14A	Q86T13	490 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	ZSWIM9	Q86XI8	627 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	MCOLN2	Q8IZK6	566 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	ATL2	Q8NHH9	583 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	SNRNP27	Q8WVK2	155 aa	Known RBP	18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	CCDC74A	Q96AQ1	378 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	WBP1	Q96G27	269 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	PDXP	Q96GD0	296 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	LIN37	Q96GY3	246 aa	Predicted RBP	18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	CELF6	Q96J87	481 aa	Known RBP	18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	ZNF641	Q96N77	438 aa	Predicted RBP	18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	TUBGCP5	Q96RT8	1024 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	APOO	Q9BUR5	198 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	GPATCH2L	Q9NWQ4	482 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	GULP1	Q9UBP9	304 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	KL	Q9UEF7	1012 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	RABGEF1	Q9UJ41	708 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	AP4E1	Q9UPM8	1137 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905	OR1A2	Q9Y585	309 aa		18.56	■□□□□ 0.56
HDAC6-231	ENST00000488905		D6RAR5	112 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	BUB1B	O60566	1050 aa	Predicted RBP	18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	ITGA2B	P08514	1039 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	SRP54	P61011	504 aa	Known RBP	18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	MTM1	Q13496	603 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	ACAD10	Q6JQN1	1059 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	NYAP1	Q6ZVC0	841 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	RD3	Q7Z3Z2	195 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	GKN2	Q86XP6	184 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	CAMK1D	Q8IU85	385 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	SDR16C5	Q8N3Y7	309 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	WDR92	Q96MX6	357 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	ATP13A3	Q9H7F0	1226 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	GPR34	Q9UPC5	381 aa		18.55	■□□□□ 0.56
HDAC6-231	ENST00000488905	CAPN8	A6NHC0	703 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	ARHGAP42	A6NI28	874 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	TNFSF15	O95150	251 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	PRKCG	P05129	697 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	FER	P16591	822 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	SERPINA4	P29622	427 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	RGR	P47804	291 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	PAPOLA	P51003	745 aa	Known RBP	18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	APTX	Q7Z2E3	356 aa	Known RBP	18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	B3GNT8	Q7Z7M8	397 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	ZNF605	Q86T29	641 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	TSEN2	Q8NCE0	465 aa	Known RBP	18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	GFM1	Q96RP9	751 aa	Known RBP	18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	SLC39A8	Q9C0K1	460 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	ANO10	Q9NW15	660 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	TAS2R14	Q9NYV8	317 aa		18.54	■□□□□ 0.56
HDAC6-231	ENST00000488905	EIF3CL	B5ME19	914 aa	Known RBP	18.53	■□□□□ 0.56
HDAC6-231	ENST00000488905	EEF2K	O00418	725 aa	Known RBP	18.53	■□□□□ 0.56
HDAC6-231	ENST00000488905	PLD2	O14939	933 aa		18.53	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms