RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 KDELR1P24390 212 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 GARSP41250 739 aaKnown RBP20.57■□□□□ 0.88
HDAC4-209ENST00000487617 THOP1P52888 689 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 MAXP61244 160 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 HNRNPKP61978 463 aaKnown RBP eCLIP20.57■□□□□ 0.88
HDAC4-209ENST00000487617 GALNT2Q10471 571 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 LRRC14Q15048 493 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 IRF4Q15306 451 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 PDCD6IPQ8WUM4 868 aaKnown RBP20.57■□□□□ 0.88
HDAC4-209ENST00000487617 FAF2Q96CS3 445 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 NOD2Q9HC29 1040 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 NT5MQ9NPB1 228 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 PCDHGC4Q9Y5F7 938 aa20.57■□□□□ 0.88
HDAC4-209ENST00000487617 LRRD1A4D1F6 860 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 SIGLEC6O43699 453 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 CSF2P04141 144 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 ACADVLP49748 655 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 ZNF75DP51815 510 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 YPEL5P62699 121 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 PTK2BQ14289 1009 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 WSCD2Q2TBF2 565 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 TIGD7Q6NT04 549 aaPredicted RBP20.56■□□□□ 0.88
HDAC4-209ENST00000487617 DHRS13Q6UX07 377 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 PQLC3Q8N755 202 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 OR4C6Q8NH72 309 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 ANP32EQ9BTT0 268 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 PCDHGA1Q9Y5H4 931 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 CEP295Q9C0D2 2601 aa20.56■□□□□ 0.88
HDAC4-209ENST00000487617 COL5A1P20908 1838 aaPredicted RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 A0A1W2PQ67 120 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 CFAP69A5D8W1 941 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 NEMP2A6NFY4 417 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 HTRA2O43464 458 aaPredicted RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 SOCS5O75159 536 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 RFPL3O75679 317 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 ALPPL2P10696 532 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 NME1P15531 152 aaKnown RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 JUNDP17535 347 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 CKMT2P17540 419 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 MAGEA1P43355 309 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 ITKQ08881 620 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 RALGDSQ12967 914 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 EIF2B5Q13144 721 aaKnown RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 ZNF211Q13398 564 aaPredicted RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 IFI16Q16666 785 aaKnown RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 RALGPS1Q5JS13 557 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 CCNI2Q6ZMN8 369 aaPredicted RBP20.55■□□□□ 0.88
HDAC4-209ENST00000487617 TMPRSS7Q7RTY8 843 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 GALNT15Q8N3T1 639 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 TEX26Q8N6G2 289 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 RNF157Q96PX1 679 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 KLF15Q9UIH9 416 aa20.55■□□□□ 0.88
HDAC4-209ENST00000487617 A8MX80 341 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 TOR1BO14657 336 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 MATN3O15232 486 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 CPP00450 1065 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 C1SP09871 688 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 ELFN1P0C7U0 828 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 TNNT1P13805 278 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 MX2P20592 715 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 CCNCP24863 283 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 SLC1A1P43005 524 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 GBE1Q04446 702 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 TCEAL1Q15170 157 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 PROX2Q3B8N5 592 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 LIPIQ6XZB0 460 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 DPPA4Q7L190 304 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 ZNF548Q8NEK5 533 aaPredicted RBP20.54■□□□□ 0.88
HDAC4-209ENST00000487617 MAML1Q92585 1016 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 MRFAP1L1Q96HT8 127 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 TSGA13Q96PP4 275 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 B4GALT6Q9UBX8 382 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 HYOU1Q9Y4L1 999 aa20.54■□□□□ 0.88
HDAC4-209ENST00000487617 TMEM8BA6NDV4 472 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 SCAMP1O15126 338 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 NEBLO76041 1014 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 RECQL5O94762 991 aaPredicted RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 KRT1P04264 644 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 PCCBP05166 539 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 CDK4P11802 303 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 NOP2P46087 812 aaKnown RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 DAB2P98082 770 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 SLC10A2Q12908 348 aaPredicted RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 TRAF2Q12933 501 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 INPP5AQ14642 412 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 AGERQ15109 404 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 SMAD1Q15797 465 aaKnown RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 ODF2Q5BJF6 829 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 LRRC38Q5VT99 294 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 MACC1Q6ZN28 852 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 CCNYQ8ND76 341 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 LRRN4Q8WUT4 740 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 BTN2A2Q8WVV5 523 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 SPOCK2Q92563 424 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 ZNF830Q96NB3 372 aaPredicted RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 SEMA3CQ99985 751 aa20.53■□□□□ 0.88
HDAC4-209ENST00000487617 MAK16Q9BXY0 300 aaKnown RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 POLR1EQ9GZS1 481 aaKnown RBP20.53■□□□□ 0.88
HDAC4-209ENST00000487617 RBM22Q9NW64 420 aaKnown RBP eCLIP20.53■□□□□ 0.889e-6■□□□□ 9.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms