RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TRAFD1O14545 582 aaPredicted RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 KCNK3O14649 394 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 VILLO15195 856 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 MMP20O60882 483 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 OPHN1O60890 802 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 KCNK5O95279 499 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 CER1O95813 267 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 PAK4O96013 591 aaPredicted RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 CPP00450 1065 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 PTMAP06454 111 aaKnown RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 HNRNPA2B1P22626 353 aaKnown RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 AKT2P31751 481 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 NR2C2P49116 596 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 PEX5P50542 639 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 SUOXP51687 545 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 COPS2P61201 443 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 ELP6Q0PNE2 266 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 SGCGQ13326 291 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 ZNF211Q13398 564 aaPredicted RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 FGL2Q14314 439 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 HLA-BQ31612 363 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 IL27RAQ6UWB1 636 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 BZW1Q7L1Q6 419 aaKnown RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 ZC3H18Q86VM9 953 aaKnown RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 RNF10Q8N5U6 811 aaKnown RBP14.87□□□□□ -0.03
USP4-212ENST00000486549 FATE1Q969F0 183 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 SKA1Q96BD8 255 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 ECHDC3Q96DC8 303 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 HERPUD2Q9BSE4 406 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 OSBPL8Q9BZF1 889 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 GAREM1Q9H706 876 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 IL21RQ9HBE5 538 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 ATP8A1Q9Y2Q0 1164 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 PCDHB9Q9Y5E1 797 aa14.87□□□□□ -0.03
USP4-212ENST00000486549 ASCC3Q8N3C0 2202 aaKnown RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 A0A1W2PR77 199 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 A8MX80 341 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 MIF4GDA9UHW6 222 aaKnown RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 H0Y8X5 98 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 RIOK3O14730 519 aaKnown RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 RAD51BO15315 384 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 SOCS5O75159 536 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 PYGMP11217 842 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 CETN2P41208 172 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 NOVA1P51513 510 aaKnown RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 CLDN2P57739 230 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 POLR2LP62875 67 aaKnown RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 IFI35P80217 286 aaPredicted RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 RALGPS1Q5JS13 557 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 BBS12Q6ZW61 710 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 TMEM145Q8NBT3 493 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 TFB1MQ8WVM0 346 aaKnown RBP14.86□□□□□ -0.03
USP4-212ENST00000486549 AMACRQ9UHK6 382 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 COQ6Q9Y2Z9 468 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 RAI2Q9Y5P3 530 aa14.86□□□□□ -0.03
USP4-212ENST00000486549 TLR4O00206 839 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 DDX3YO15523 660 aaKnown RBP14.85□□□□□ -0.03
USP4-212ENST00000486549 HTRA2O43464 458 aaPredicted RBP14.85□□□□□ -0.03
USP4-212ENST00000486549 TM7SF2O76062 418 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 MMP12P39900 470 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 CTSKP43235 329 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 LIG3P49916 1009 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 NIPAL4Q0D2K0 466 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 SLC14A1Q13336 389 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 PRKD1Q15139 912 aaPredicted RBP14.85□□□□□ -0.03
USP4-212ENST00000486549 TMEM52BQ4KMG9 183 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 PRAMEF14Q5SWL7 426 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 ARMC12Q5T9G4 340 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 ALG1LQ6GMV1 187 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 PSAPL1Q6NUJ1 521 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 GCNT7Q6ZNI0 430 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 PTAR1Q7Z6K3 402 aaPredicted RBP14.85□□□□□ -0.03
USP4-212ENST00000486549 ZSCAN30Q86W11 494 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 CNTD1Q8N815 330 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 MFSD2AQ8NA29 543 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 KLHDC7BQ96G42 594 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 AGAP3Q96P47 875 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 IL12RB2Q99665 862 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 FAM118BQ9BPY3 351 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 C1QTNF2Q9BXJ5 285 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 BRD8Q9H0E9 1235 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 DNAAF2Q9NVR5 837 aaKnown RBP14.85□□□□□ -0.03
USP4-212ENST00000486549 ANGPTL2Q9UKU9 493 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 FNDC3AQ9Y2H6 1198 aaKnown RBP14.85□□□□□ -0.03
USP4-212ENST00000486549 PPP2R2CQ9Y2T4 447 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 NCOR2Q9Y618 2525 aa14.85□□□□□ -0.03
USP4-212ENST00000486549 GOLGA8CPA6NN73 597 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 H7C0C1 242 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 APOC4-APOC2K7ER74 178 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 LZTS3O60299 673 aaPredicted RBP14.84□□□□□ -0.03
USP4-212ENST00000486549 PGLSO95336 258 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 APOC2P02655 101 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 THEGLP0DJG4 465 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 C6P13671 934 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 CTPS1P17812 591 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 CES1P23141 567 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 PTPN7P35236 360 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 CD86P42081 329 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 ATP5OP48047 213 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 NXPH1P58417 271 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms