RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TBC1D3Q8IZP1 549 aaPredicted RBP17.24■□□□□ 0.35
VIM-205ENST00000485947 CCHCR1Q8TD31 782 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 CASKIN2Q8WXE0 1202 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 OLFM3Q96PB7 478 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 SPON2Q9BUD6 331 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 HDAC8Q9BY41 377 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 ANKZF1Q9H8Y5 726 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 DYRK4Q9NR20 520 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TM7SF3Q9NS93 570 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 SAE1Q9UBE0 346 aaPredicted RBP17.24■□□□□ 0.35
VIM-205ENST00000485947 SARDHQ9UL12 918 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 PCDHB9Q9Y5E1 797 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 NUMA1Q14980 2115 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 H7C0C1 242 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 TTI1O43156 1089 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 RAMP2O60895 175 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 HEXIM1O94992 359 aaKnown RBP17.23■□□□□ 0.35
VIM-205ENST00000485947 CD38P28907 300 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 STIP1P31948 543 aaKnown RBP17.23■□□□□ 0.35
VIM-205ENST00000485947 CTSKP43235 329 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 ATP5OP48047 213 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 KCNJ1P48048 391 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 C21orf59P57076 290 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 SLC10A2Q12908 348 aaPredicted RBP17.23■□□□□ 0.35
VIM-205ENST00000485947 PTK6Q13882 451 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 AGBL4Q5VU57 503 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 OR7D4Q8NG98 312 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 ARHGEF2Q92974 986 aaKnown RBP17.23■□□□□ 0.35
VIM-205ENST00000485947 QKIQ96PU8 341 aaKnown RBP eCLIP17.23■□□□□ 0.35
VIM-205ENST00000485947 CDC6Q99741 560 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 FAM118BQ9BPY3 351 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 FERMT1Q9BQL6 677 aa17.23■□□□□ 0.35
VIM-205ENST00000485947 UTP11Q9Y3A2 253 aaKnown RBP17.23■□□□□ 0.35
VIM-205ENST00000485947 BHMG1C9JSJ3 638 aaPredicted RBP17.22■□□□□ 0.35
VIM-205ENST00000485947 CCT8P50990 548 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 NDST2P52849 883 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 SIM1P81133 766 aaPredicted RBP17.22■□□□□ 0.35
VIM-205ENST00000485947 ARF5P84085 180 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 CNTN1Q12860 1018 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 POLD3Q15054 466 aaPredicted RBP17.22■□□□□ 0.35
VIM-205ENST00000485947 PPP1R7Q15435 360 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 TRIP6Q15654 476 aaKnown RBP17.22■□□□□ 0.35
VIM-205ENST00000485947 INAVAQ3KP66 663 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 SETMARQ53H47 684 aaPredicted RBP17.22■□□□□ 0.35
VIM-205ENST00000485947 CARD16Q5EG05 197 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 NAPEPLDQ6IQ20 393 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 WDR93Q6P2C0 686 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 DARS2Q6PI48 645 aaKnown RBP17.22■□□□□ 0.35
VIM-205ENST00000485947 GSTA5Q7RTV2 222 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 LRRC49Q8IUZ0 686 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 UMODL1-AS1Q8N2C9 162 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 OXR1Q8N573 874 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 MFSD2AQ8NA29 543 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 OR2I1PQ8NGU4 316 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 FAM174AQ8TBP5 190 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 HDAC11Q96DB2 347 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 HEPHQ9BQS7 1158 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 KLC2Q9H0B6 622 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 ERVMER34-1Q9H9K5 563 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 IL36AQ9UHA7 158 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 WASF3Q9UPY6 502 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 MFHAS1Q9Y4C4 1052 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 SNX11Q9Y5W9 270 aa17.22■□□□□ 0.35
VIM-205ENST00000485947 LAMA1P25391 3075 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 IGF2RP11717 2491 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 CHD5Q8TDI0 1954 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 K7ERQ8 282 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 KPNA3O00505 521 aaPredicted RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 SMAD6O43541 496 aaKnown RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 SH3BP5O60239 455 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 CBFA2T3O75081 653 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 ZNF821O75541 412 aaPredicted RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 GALNT2Q10471 571 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 PARP15Q460N3 678 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 INO80DQ53TQ3 878 aaPredicted RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 PIP5KL1Q5T9C9 394 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 AFMIDQ63HM1 303 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 LINGO4Q6UY18 593 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 ERN2Q76MJ5 926 aaKnown RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 ZC3H18Q86VM9 953 aaKnown RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 IFT20Q8IY31 132 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 NPWQ8N729 165 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 CCDC89Q8N998 374 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 TFB1MQ8WVM0 346 aaKnown RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 RTP4Q96DX8 246 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 SERAC1Q96JX3 654 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 ERP44Q9BS26 406 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 TMEM121Q9BTD3 319 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 PCDH9Q9HC56 1237 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 DMGDHQ9UI17 866 aaKnown RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 PCOLCE2Q9UKZ9 415 aa17.21■□□□□ 0.35
VIM-205ENST00000485947 FNDC3AQ9Y2H6 1198 aaKnown RBP17.21■□□□□ 0.35
VIM-205ENST00000485947 A0A1W2PR77 199 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 PRAMEF26H0Y7S4 382 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 NDC80O14777 642 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 MTSS1O43312 755 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 KDELR3O43731 214 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 BNIP3LO60238 219 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 GSRP00390 522 aa17.2■□□□□ 0.34
VIM-205ENST00000485947 CTSLP07711 333 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms