RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ACTL7AQ9Y615 435 aa8.34□□□□□ -1.07
SF3A1-208ENST00000485618 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 USP27XA6NNY8 438 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ERI2A8K979 691 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 UPK3BL1B0FP48 263 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 UPK3BL2E5RIL1 263 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 E7EVH7 732 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 HTRA2O43464 458 aaPredicted RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 LIASO43766 372 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 GCATO75600 419 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 FSBPO95073 299 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CPP00450 1065 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ATP1A1P05023 1023 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CTSLP07711 333 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CR2P20023 1033 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CD27P26842 260 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 RBL1P28749 1068 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 AKT2P31751 481 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CD86P42081 329 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 LMAN1P49257 510 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ADPRHP54922 357 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 MAXP61244 160 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 FAM193AP78312 1265 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 SARNPP82979 210 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ADCY2Q08462 1091 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 MPP3Q13368 585 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 LAMB3Q13751 1172 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ARHGEF7Q14155 803 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 SF3A2Q15428 464 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CCDC6Q16204 474 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 POM121L1PQ3SYA9 428 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PLK5Q496M5 336 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ANKRD20A2Q5SQ80 823 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ANKRD20A1Q5TYW2 823 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 DCAF12L1Q5VU92 463 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ANKRD20A3Q5VUR7 823 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PAPD7Q5XG87 772 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PMS2CLQ68D20 193 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 KIAA0895LQ68EN5 471 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ADAT2Q7Z6V5 191 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 TRIM69Q86WT6 500 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 HORMAD1Q86X24 394 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CAMK1DQ8IU85 385 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 SYT12Q8IV01 421 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 RAVER1Q8IY67 606 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 TMEFF1Q8IYR6 380 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 RASGEF1CQ8N431 466 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 FAM71DQ8N9W8 422 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 SLC35B2Q8TB61 432 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 CCHCR1Q8TD31 782 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ASB12Q8WXK4 309 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 MAGOHBQ96A72 148 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 FCRL5Q96RD9 977 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 FSD1LQ9BXM9 530 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PCDH9Q9HC56 1237 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 RAD18Q9NS91 495 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PAK5Q9P286 719 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 ANGPTL2Q9UKU9 493 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 SARDHQ9UL12 918 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PCDHB9Q9Y5E1 797 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 PCDHGC4Q9Y5F7 938 aa8.33□□□□□ -1.08
SF3A1-208ENST00000485618 TPRP12270 2363 aaKnown RBP8.33□□□□□ -1.08
SF3A1-208ENST00000485618 GON4LQ3T8J9 2241 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 SDK1Q7Z5N4 2213 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 TSPAN11A1L157 253 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PRAMEF26H0Y7S4 382 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 TOR1BO14657 336 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 RIOK3O14730 519 aaKnown RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 NDC80O14777 642 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 KHNYNO15037 678 aaKnown RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 LZTS3O60299 673 aaPredicted RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PGLSO95336 258 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PIGNO95427 931 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 IFNB1P01574 187 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 HLA-DQB2P05538 268 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 SYPP08247 313 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 TIMP2P16035 220 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 GKP32189 559 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ACSL1P33121 698 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 DRD3P35462 400 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 FDFT1P37268 417 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 GRIA4P48058 902 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 FNTAP49354 379 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 AFF3P51826 1226 aaKnown RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PDE1BQ01064 536 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 DSC2Q02487 901 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 CREB5Q02930 508 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 CDK18Q07002 472 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 CKAP4Q07065 602 aaKnown RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 WASHC5Q12768 1159 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 OVGP1Q12889 678 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 SNX1Q13596 522 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 STAT4Q14765 748 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 DUOXA1Q1HG43 343 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PIP5KL1Q5T9C9 394 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 AGBL4Q5VU57 503 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ZDHHC20Q5W0Z9 365 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 AADACL2Q6P093 401 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PARS2Q7L3T8 475 aaKnown RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 LINC00523Q86TU6 105 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms