RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 DOLKQ9UPQ8 538 aa13.14□□□□□ -0.31
HDAC6-227ENST00000485102 SLC28A2O43868 658 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 HOXC4P09017 264 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-227ENST00000485102 LIPCP11150 499 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 CTSEP14091 401 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 GLB1P16278 677 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 ITIH2P19823 946 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 CSRP3P50461 194 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 SRP54P61011 504 aaKnown RBP13.13□□□□□ -0.31
HDAC6-227ENST00000485102 RHOAP61586 193 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 CCL7P80098 99 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 FMO1Q01740 532 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 PTP4A2Q12974 167 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 MTM1Q13496 603 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 SERINC3Q13530 473 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 INPP5AQ14642 412 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 CDO1Q16878 200 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 LINC00303Q3SY05 128 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 PARP15Q460N3 678 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 BRAT1Q6PJG6 821 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 TRIM72Q6ZMU5 477 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 SLFN11Q7Z7L1 901 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 HID1Q8IV36 788 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 CCDC185Q8N715 623 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 JOSD2Q8TAC2 188 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 TSACCQ96A04 125 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-227ENST00000485102 SGF29Q96ES7 293 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 HMCESQ96FZ2 354 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 SUV39H2Q9H5I1 410 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 STARD5Q9NSY2 213 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 GPR34Q9UPC5 381 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 DAAM1Q9Y4D1 1078 aa13.13□□□□□ -0.31
HDAC6-227ENST00000485102 TNFRSF10CO14798 259 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 RPLP0P05388 317 aaKnown RBP13.12□□□□□ -0.31
HDAC6-227ENST00000485102 SFTPCP11686 197 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 KRT3P12035 628 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 UNGP13051 313 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-227ENST00000485102 CHRNB2P17787 502 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 ITGB6P18564 788 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 EPHB2P29323 1055 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 RFC1P35251 1148 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-227ENST00000485102 CSNK1DP48730 415 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 AIF1P55008 147 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 CYTH1Q15438 398 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 NFKBIBQ15653 356 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 LRRC73Q5JTD7 316 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 CERCAMQ5T4B2 595 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 ENPP7Q6UWV6 458 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 LEKR1Q6ZMV7 388 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 USP53Q70EK8 1073 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 DTX1Q86Y01 620 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 DNAAF5Q86Y56 855 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 FAM172AQ8WUF8 416 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 WDR92Q96MX6 357 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 TUBGCP5Q96RT8 1024 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 WRAP53Q9BUR4 548 aaKnown RBP13.12□□□□□ -0.31
HDAC6-227ENST00000485102 KLC2Q9H0B6 622 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 EPB41L5Q9HCM4 733 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 PCDH12Q9NPG4 1184 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 DONSONQ9NYP3 566 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 LHX3Q9UBR4 397 aa13.12□□□□□ -0.31
HDAC6-227ENST00000485102 A0A1W2PQC6 194 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 SIGLEC16A6NMB1 481 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-227ENST00000485102 RASA4BC9J798 803 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 INSIG1O15503 277 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 RASA4O43374 803 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 TNFP01375 233 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 JMJD7P0C870 316 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 XPAP23025 273 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-227ENST00000485102 EEF1GP26641 437 aaKnown RBP13.11□□□□□ -0.31
HDAC6-227ENST00000485102 CD82P27701 267 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 HTR7P34969 479 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 TRIM23P36406 574 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 MMP12P39900 470 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 JAM2P57087 298 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 KIAA1024LP59773 190 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 STX1AQ16623 288 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 CAVIN1Q6NZI2 390 aaKnown RBP13.11□□□□□ -0.31
HDAC6-227ENST00000485102 ERAP2Q6P179 960 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 WDR59Q6PJI9 974 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 PHF13Q86YI8 300 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-227ENST00000485102 CCNJLQ8IV13 435 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 C3orf20Q8ND61 904 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 SLC20A1Q8WUM9 679 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 C11orf70Q9BRQ4 267 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 FOXP3Q9BZS1 431 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 GANQ9H2C0 597 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 CATSPERBQ9H7T0 1116 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 PDFQ9HBH1 243 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 SEPT10Q9P0V9 454 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 SIRPGQ9P1W8 387 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 KLQ9UEF7 1012 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 IL17BQ9UHF5 180 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 COQ6Q9Y2Z9 468 aa13.11□□□□□ -0.31
HDAC6-227ENST00000485102 TERTO14746 1132 aaKnown RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 FGF10O15520 208 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 ARHGAP6O43182 974 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 NUDT21O43809 227 aaKnown RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 GPD1P21695 349 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms