RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TBC1D25Q3MII6 688 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 PERM1Q5SV97 790 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 ERAP2Q6P179 960 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 HID1Q8IV36 788 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 SLC35F3Q8IY50 421 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 PAF1Q8N7H5 531 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 TSACCQ96A04 125 aaPredicted RBP21.73■■□□□ 1.07
USP40-215ENST00000484528 AIPL1Q9NZN9 384 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 ATP8A1Q9Y2Q0 1164 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 OR1A2Q9Y585 309 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 RAI2Q9Y5P3 530 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 EIF3CLB5ME19 914 aaKnown RBP21.72■■□□□ 1.07
USP40-215ENST00000484528 LMO7DNF2Z398 122 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 TPP1O14773 563 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 LZTS3O60299 673 aaPredicted RBP21.72■■□□□ 1.07
USP40-215ENST00000484528 PCCBP05166 539 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 GZMAP12544 262 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 SERPINA4P29622 427 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 SUOXP51687 545 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 C6orf132Q5T0Z8 1188 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 AFMIDQ63HM1 303 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 BRAT1Q6PJG6 821 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 RD3Q7Z3Z2 195 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 FNIP1Q8TF40 1166 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 NAF1Q96HR8 494 aaKnown RBP21.72■■□□□ 1.07
USP40-215ENST00000484528 ZNF641Q96N77 438 aaPredicted RBP21.72■■□□□ 1.07
USP40-215ENST00000484528 EIF3CQ99613 913 aaKnown RBP21.72■■□□□ 1.07
USP40-215ENST00000484528 BOCQ9BWV1 1114 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 ATP13A3Q9H7F0 1226 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 NCKIPSDQ9NZQ3 722 aa21.72■■□□□ 1.07
USP40-215ENST00000484528 CWC15Q9P013 229 aaKnown RBP21.72■■□□□ 1.07
USP40-215ENST00000484528 EME2A4GXA9 379 aaPredicted RBP21.71■■□□□ 1.07
USP40-215ENST00000484528 YY2O15391 372 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 TCF4P15884 667 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 INPP5AQ14642 412 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 ALG11Q2TAA5 492 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 SMTNL2Q2TAL5 461 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 HCAR2Q8TDS4 363 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 TUBGCP5Q96RT8 1024 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 SYNDIG1Q9H7V2 258 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 SIRPGQ9P1W8 387 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 SCINQ9Y6U3 715 aa21.71■■□□□ 1.07
USP40-215ENST00000484528 TTC24A2A3L6 582 aaPredicted RBP21.7■■□□□ 1.06
USP40-215ENST00000484528 SERPINC1P01008 464 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 RALGDSQ12967 914 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 DPYSQ14117 519 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 NFATC4Q14934 902 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 ISXQ2M1V0 245 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 TDRD12Q587J7 1177 aaKnown RBP21.7■■□□□ 1.06
USP40-215ENST00000484528 C3orf38Q5JPI3 329 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 KCTD16Q68DU8 428 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 ENPP7Q6UWV6 458 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 PLA2G15Q8NCC3 412 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 PCDH19Q8TAB3 1148 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 NSMCE3Q96MG7 304 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 APOOQ9BUR5 198 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 ZWILCHQ9H900 591 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 GULP1Q9UBP9 304 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 DOLKQ9UPQ8 538 aa21.7■■□□□ 1.06
USP40-215ENST00000484528 SMG1Q96Q15 3661 aaKnown RBP21.69■■□□□ 1.06
USP40-215ENST00000484528 ARHGEF17Q96PE2 2063 aaPredicted RBP21.69■■□□□ 1.06
USP40-215ENST00000484528 A8MX80 341 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 TOR1BO14657 336 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 CTSEP14091 401 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 IL1R2P27930 398 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 CSNK1DP48730 415 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 RPIAP49247 311 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 SCNN1BP51168 640 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 HK3P52790 923 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 BCL2L1Q07817 233 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 IL10RBQ08334 325 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 IQCB1Q15051 598 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 SPACA3Q8IXA5 215 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 KYQ8NBH2 561 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 HSPH1Q92598 858 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 GLMNQ92990 594 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 PDXPQ96GD0 296 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 ATXN7L3BQ96GX2 97 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 TBATAQ96M53 351 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 FCRL3Q96P31 734 aaPredicted RBP21.69■■□□□ 1.06
USP40-215ENST00000484528 LGMNQ99538 433 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 POLR1BQ9H9Y6 1135 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 ETNK2Q9NVF9 386 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 KLQ9UEF7 1012 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 UNC13CQ8NB66 2214 aa21.69■■□□□ 1.06
USP40-215ENST00000484528 A0A1W2PNU3 283 aaPredicted RBP21.68■■□□□ 1.06
USP40-215ENST00000484528 H3BRJ5 948 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 RASGRP1O95267 797 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 AMPD1P23109 780 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 HTR1BP28222 390 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 PEX5P50542 639 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 BLKP51451 505 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 SLC10A7Q0GE19 358 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 NR1I3Q14994 352 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 RBM44Q6ZP01 1051 aaKnown RBP21.68■■□□□ 1.06
USP40-215ENST00000484528 PSTKQ8IV42 348 aaKnown RBP21.68■■□□□ 1.06
USP40-215ENST00000484528 ECHDC3Q96DC8 303 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 TRIM11Q96F44 468 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 WDR92Q96MX6 357 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 FUCA2Q9BTY2 467 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms