RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 LIN7AO14910 233 aaPredicted RBP14.71□□□□□ -0.05
HDAC6-220ENST00000477528 TSPAN8P19075 237 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 GRK4P32298 578 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 PPP3CCP48454 512 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 ZBTB17Q13105 803 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 ZNF284Q2VY69 593 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 SCAMP5Q8TAC9 235 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 PANX3Q96QZ0 392 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 TTPALQ9BTX7 342 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 ADAMTS10Q9H324 1103 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 PAPOLBQ9NRJ5 636 aaKnown RBP14.71□□□□□ -0.05
HDAC6-220ENST00000477528 TK2O00142 265 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 RPP40O75818 363 aaKnown RBP14.71□□□□□ -0.05
HDAC6-220ENST00000477528 DUSP4Q13115 394 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 MGEA5O60502 916 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 DGKAP23743 735 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 DSC2Q02487 901 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 DDX39BQ13838 428 aaKnown RBP14.71□□□□□ -0.06
HDAC6-220ENST00000477528 TSTD2Q5T7W7 516 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 KIAA0930Q6ICG6 404 aaPredicted RBP14.71□□□□□ -0.06
HDAC6-220ENST00000477528 TXNDC11Q6PKC3 985 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 NUDT18Q6ZVK8 323 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 FUBP3Q96I24 572 aaKnown RBP eCLIP14.71□□□□□ -0.06
HDAC6-220ENST00000477528 EXOC2Q96KP1 924 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 ZFRQ96KR1 1074 aaKnown RBP14.71□□□□□ -0.06
HDAC6-220ENST00000477528 TRAPPC9Q96Q05 1148 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 FAM126AQ9BYI3 521 aaPredicted RBP14.71□□□□□ -0.06
HDAC6-220ENST00000477528 PARVBQ9HBI1 364 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 COMMD8Q9NX08 183 aa14.71□□□□□ -0.06
HDAC6-220ENST00000477528 COL5A3P25940 1745 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 CLDN11O75508 207 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 EOMESO95936 686 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 PAX7P23759 505 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 MAPK8P45983 427 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 GPR141Q7Z602 305 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 HORMAD1Q86X24 394 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 CASP10Q92851 521 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 CORO1CQ9ULV4 474 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 SERPINA4P29622 427 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 ADSLP30566 484 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 PIK3CGP48736 1102 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 DLG2Q15700 870 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 CYP51A1Q16850 503 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 IL27RAQ6UWB1 636 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 FSTL5Q8N475 847 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 EBF4Q9BQW3 602 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 RHOBTB2Q9BYZ6 727 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 CACNG4Q9UBN1 327 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 ABLIM1O14639 778 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 HNRNPRO43390 633 aaKnown RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 ELNP15502 786 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 HIST2H2ACQ16777 129 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 UBAP2Q5T6F2 1119 aaKnown RBP14.7□□□□□ -0.06
HDAC6-220ENST00000477528 HIST2H2AA3Q6FI13 130 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 UBR7Q8N806 425 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 VPS33AQ96AX1 596 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 HMCESQ96FZ2 354 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 SMOQ99835 787 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 BDH2Q9BUT1 245 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 OPTCQ9UBM4 332 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 MFHAS1Q9Y4C4 1052 aa14.7□□□□□ -0.06
HDAC6-220ENST00000477528 ATP6AP2A0A1C7CYW4 349 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 NRP1O14786 923 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 ATP6AP2O75787 350 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 LDLRP01130 860 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 HGFP14210 728 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 TACR2P21452 398 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 PBX3P40426 434 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 PURAQ00577 322 aaKnown RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 IKBKEQ14164 716 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 HPS6Q86YV9 775 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 DENND6AQ8IWF6 608 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 RNF168Q8IYW5 571 aaPredicted RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 CFAP52Q8N1V2 620 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 DENND1AQ8TEH3 1009 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 MTIF3Q9H2K0 278 aaKnown RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 PIF1Q9H611 641 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 RGS14O43566 566 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 PEX11AO75192 247 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 NDST3O95803 873 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 IQCF3P0C7M6 154 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 VAV1P15498 845 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 MAPKAPK2P49137 400 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 CDH13P55290 713 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 TRIP4Q15650 581 aaPredicted RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 FAM98BQ52LJ0 330 aaKnown RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 GRAMD4Q6IC98 578 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 RFWD3Q6PCD5 774 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 LENG8Q96PV6 779 aaPredicted RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 SEPHS2Q99611 448 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 FAM32AQ9Y421 112 aaKnown RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 COL24A1Q17RW2 1714 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 ECM29Q5VYK3 1845 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 OR56A5P0C7T3 313 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 CXCR3P49682 368 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 CHN2P52757 468 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 GALNT2Q10471 571 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 ACAP2Q15057 778 aa14.69□□□□□ -0.06
HDAC6-220ENST00000477528 VARS2Q5ST30 1063 aaKnown RBP14.69□□□□□ -0.06
HDAC6-220ENST00000477528 TMEM63BQ5T3F8 832 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms