RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 KMT2BQ9UMN6 2715 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-203ENST00000474056 TRIM38O00635 465 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 FFAR2O15552 330 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 SIGLEC6O43699 453 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 KRT7P08729 469 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 GIMD1P0DJR0 217 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 RALGDSQ12967 914 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 EIF2B5Q13144 721 aaKnown RBP18.06■□□□□ 0.48
UPF3A-203ENST00000474056 PAFAH1B3Q15102 231 aaKnown RBP18.06■□□□□ 0.48
UPF3A-203ENST00000474056 PDK2Q15119 407 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 MARCH9Q86YJ5 346 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 TC2NQ8N9U0 490 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 FAF2Q96CS3 445 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 NUDCD1Q96RS6 583 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 C1QTNF7Q9BXJ2 289 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 PNMA8BQ9ULN7 279 aaPredicted RBP18.06■□□□□ 0.48
UPF3A-203ENST00000474056 PCDHGA1Q9Y5H4 931 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 RP1P56715 2156 aa18.06■□□□□ 0.48
UPF3A-203ENST00000474056 RFPL3O75679 317 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 CSF2P04141 144 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 NME1P15531 152 aaKnown RBP18.05■□□□□ 0.48
UPF3A-203ENST00000474056 HSPA9P38646 679 aaKnown RBP18.05■□□□□ 0.48
UPF3A-203ENST00000474056 GARSP41250 739 aaKnown RBP18.05■□□□□ 0.48
UPF3A-203ENST00000474056 MMP13P45452 471 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 LIG3P49916 1009 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 HNRNPKP61978 463 aaKnown RBP eCLIP18.05■□□□□ 0.48
UPF3A-203ENST00000474056 GALNT2Q10471 571 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 PROX2Q3B8N5 592 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 ZFYVE27Q5T4F4 411 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 MARC1Q5VT66 337 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 CCNI2Q6ZMN8 369 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-203ENST00000474056 RHOT2Q8IXI1 618 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 BBS5Q8N3I7 341 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 PQLC3Q8N755 202 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 PAF1Q8N7H5 531 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 OR4C6Q8NH72 309 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 NSMCE1Q8WV22 266 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 RFFLQ8WZ73 363 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 RAPGEF5Q92565 580 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 NOD2Q9HC29 1040 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 SCUBE2Q9NQ36 999 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 PCDHGC4Q9Y5F7 938 aa18.05■□□□□ 0.48
UPF3A-203ENST00000474056 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 H3BM21 787 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 HTRA2O43464 458 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 NEBLO76041 1014 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 MTA2O94776 668 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 CKMT2P17540 419 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 KDELR1P24390 212 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 THOP1P52888 689 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 CLDN6P56747 220 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 YPEL5P62699 121 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 TRAF2Q12933 501 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 LRRC14Q15048 493 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 SMAD1Q15797 465 aaKnown RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 WSCD2Q2TBF2 565 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 LIPIQ6XZB0 460 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 LRRC49Q8IUZ0 686 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 MAP7D3Q8IWC1 876 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 RBFAQ8N0V3 343 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 TEX26Q8N6G2 289 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 KDF1Q8NAX2 398 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 ZNF548Q8NEK5 533 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 PDCD6IPQ8WUM4 868 aaKnown RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 LRRN4Q8WUT4 740 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 RBSNQ9H1K0 784 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 TCEAL2Q9H3H9 227 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-203ENST00000474056 NT5MQ9NPB1 228 aa18.04■□□□□ 0.48
UPF3A-203ENST00000474056 FAM149AA5PLN7 773 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 LZTS3O60299 673 aaPredicted RBP18.03■□□□□ 0.48
UPF3A-203ENST00000474056 ELFN1P0C7U0 828 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 JUNDP17535 347 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 GM2AP17900 193 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 ARHGAP25P42331 645 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 POLR2LP62875 67 aaKnown RBP18.03■□□□□ 0.48
UPF3A-203ENST00000474056 GBE1Q04446 702 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 ZNF211Q13398 564 aaPredicted RBP18.03■□□□□ 0.48
UPF3A-203ENST00000474056 PTK2BQ14289 1009 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 AGERQ15109 404 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 DPPA4Q7L190 304 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 GALNT15Q8N3T1 639 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 NLGN3Q9NZ94 848 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 B4GALT6Q9UBX8 382 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 INTUQ9ULD6 942 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 ZMIZ1Q9ULJ6 1067 aa18.03■□□□□ 0.48
UPF3A-203ENST00000474056 ARHGEF17Q96PE2 2063 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-203ENST00000474056 LRRD1A4D1F6 860 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 TMEM8BA6NDV4 472 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 A8MX80 341 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 TOR1BO14657 336 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 SCAMP1O15126 338 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 SOCS5O75159 536 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 CPP00450 1065 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 PCCBP05166 539 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 C1SP09871 688 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 ACP1P24666 158 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 DAB2P98082 770 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 SLC10A2Q12908 348 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-203ENST00000474056 ACACAQ13085 2346 aa18.02■□□□□ 0.48
UPF3A-203ENST00000474056 IFI16Q16666 785 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms