RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SYNDIG1Q9H7V2 258 aa19.92■□□□□ 0.78
COL9A3-210ENST00000472880 SP110Q9HB58 689 aa19.92■□□□□ 0.78
COL9A3-210ENST00000472880 PCSK1NQ9UHG2 260 aa19.92■□□□□ 0.78
COL9A3-210ENST00000472880 SATB2Q9UPW6 733 aa19.92■□□□□ 0.78
COL9A3-210ENST00000472880 ATP8A1Q9Y2Q0 1164 aa19.92■□□□□ 0.78
COL9A3-210ENST00000472880 COL27A1Q8IZC6 1860 aaPredicted RBP19.92■□□□□ 0.78
COL9A3-210ENST00000472880 ATXN7O15265 892 aaPredicted RBP19.91■□□□□ 0.78
COL9A3-210ENST00000472880 YY2O15391 372 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 TEX33O43247 280 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 PRPSAP2O60256 369 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 PALMO75781 387 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 RASGRP1O95267 797 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 ALPIP09923 528 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 MMP12P39900 470 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 LIG3P49916 1009 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 HK3P52790 923 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 NFATC4Q14934 902 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 ALG11Q2TAA5 492 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 RFX8Q6ZV50 586 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 SRLQ86TD4 932 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 CAMK1DQ8IU85 385 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 ATL2Q8NHH9 583 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 KCNE4Q8WWG9 221 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 ATXN7L3BQ96GX2 97 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 KCTD15Q96SI1 283 aaPredicted RBP19.91■□□□□ 0.78
COL9A3-210ENST00000472880 CCDC3Q9BQI4 270 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 PADI4Q9UM07 663 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 ENTPD2Q9Y5L3 495 aa19.91■□□□□ 0.78
COL9A3-210ENST00000472880 LRRK1Q38SD2 2015 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 TEX51A0A1B0GUA7 166 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 DFFAO00273 331 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 BUB1BO60566 1050 aaPredicted RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 PCCBP05166 539 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 CELA2BP08218 269 aaPredicted RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 RBMS1P29558 406 aaKnown RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 RGRP47804 291 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 CSNK1DP48730 415 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 UCNP55089 124 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 SPIDRQ14159 915 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 INPP5AQ14642 412 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 TCEA2Q15560 299 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 FILIP1LQ4L180 1135 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 PPP6R3Q5H9R7 873 aaPredicted RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 ENPP7Q6UWV6 458 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 RD3Q7Z3Z2 195 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 ARL10Q8N8L6 244 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 TSEN2Q8NCE0 465 aaKnown RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 PCDH19Q8TAB3 1148 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 SLC39A7Q92504 469 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 TSACCQ96A04 125 aaPredicted RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 PEBP4Q96S96 227 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 APOOQ9BUR5 198 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 EDEM3Q9BZQ6 932 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 ASCL3Q9NQ33 180 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 RTN4Q9NQC3 1192 aaKnown RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 SIRPGQ9P1W8 387 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 GULP1Q9UBP9 304 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 KLQ9UEF7 1012 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 OR1A2Q9Y585 309 aa19.9■□□□□ 0.78
COL9A3-210ENST00000472880 FASNP49327 2511 aaKnown RBP19.9■□□□□ 0.78
COL9A3-210ENST00000472880 TK2O00142 265 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 PRKCGP05129 697 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 ERCC2P18074 760 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 TMPRSS3P57727 454 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 BCL2L1Q07817 233 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 MTM1Q13496 603 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 RFTN1Q14699 578 aaPredicted RBP19.89■□□□□ 0.77
COL9A3-210ENST00000472880 AGERQ15109 404 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 ANO6Q4KMQ2 910 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 LVRNQ6Q4G3 990 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 IGF2-ASQ6U949 168 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 ZSWIM9Q86XI8 627 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 GKN2Q86XP6 184 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 KYQ8NBH2 561 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 FNIP1Q8TF40 1166 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 WDR92Q96MX6 357 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 HAUS4Q9H6D7 363 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 CNOT8Q9UFF9 292 aaKnown RBP19.89■□□□□ 0.77
COL9A3-210ENST00000472880 SCINQ9Y6U3 715 aa19.89■□□□□ 0.77
COL9A3-210ENST00000472880 LRP4O75096 1905 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 TMEM191CA6NGB0 347 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 MIPP30301 263 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 ZNF135P52742 658 aaPredicted RBP19.88■□□□□ 0.77
COL9A3-210ENST00000472880 SRP54P61011 504 aaKnown RBP19.88■□□□□ 0.77
COL9A3-210ENST00000472880 IL10RBQ08334 325 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 AFMIDQ63HM1 303 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 FOXR1Q6PIV2 292 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 PSTKQ8IV42 348 aaKnown RBP19.88■□□□□ 0.77
COL9A3-210ENST00000472880 ARHGAP12Q8IWW6 846 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 SDR16C5Q8N3Y7 309 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 ARFGAP1Q8N6T3 406 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 NPWQ8N729 165 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 ZNF653Q96CK0 615 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 TRIM7Q9C029 511 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 GPR34Q9UPC5 381 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 PCDHGA8Q9Y5G5 932 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 PTPRQQ9UMZ3 2332 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 SHROOM3Q8TF72 1996 aa19.88■□□□□ 0.77
COL9A3-210ENST00000472880 ANKRD36A6QL64 1941 aa19.87■□□□□ 0.77
COL9A3-210ENST00000472880 CFAP69A5D8W1 941 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms