RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SCG3Q8WXD2 468 aaKnown RBP17.63■□□□□ 0.41
COL7A1-208ENST00000470076 CELF6Q96J87 481 aaKnown RBP17.63■□□□□ 0.41
COL7A1-208ENST00000470076 SLC39A8Q9C0K1 460 aa17.63■□□□□ 0.41
COL7A1-208ENST00000470076 NAT10Q9H0A0 1025 aaKnown RBP17.63■□□□□ 0.41
COL7A1-208ENST00000470076 ATP13A3Q9H7F0 1226 aa17.63■□□□□ 0.41
COL7A1-208ENST00000470076 ASCL3Q9NQ33 180 aa17.63■□□□□ 0.41
COL7A1-208ENST00000470076 DOLKQ9UPQ8 538 aa17.63■□□□□ 0.41
COL7A1-208ENST00000470076 ATP8A1Q9Y2Q0 1164 aa17.63■□□□□ 0.41
COL7A1-208ENST00000470076 COQ6Q9Y2Z9 468 aa17.63■□□□□ 0.41
COL7A1-208ENST00000470076 CFAP69A5D8W1 941 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 TMCO5BA8MYB1 307 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 DAPK3O43293 454 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 BUB1BO60566 1050 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-208ENST00000470076 PALMO75781 387 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 RNF8O76064 485 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 RASGRP1O95267 797 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 CTSEP14091 401 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 SERPINA4P29622 427 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 MMP12P39900 470 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 LIG3P49916 1009 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 UCNP55089 124 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 NFATC4Q14934 902 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 CA9Q16790 459 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 C3orf38Q5JPI3 329 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 BROXQ5VW32 411 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 CRTC1Q6UUV9 634 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 RFX8Q6ZV50 586 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 SRLQ86TD4 932 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 CAMK1DQ8IU85 385 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 HID1Q8IV36 788 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 PSTKQ8IV42 348 aaKnown RBP17.62■□□□□ 0.41
COL7A1-208ENST00000470076 ATL2Q8NHH9 583 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 FNIP1Q8TF40 1166 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 SLC39A7Q92504 469 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 ATXN7L3BQ96GX2 97 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 APOOQ9BUR5 198 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 SNRNP25Q9BV90 132 aaKnown RBP17.62■□□□□ 0.41
COL7A1-208ENST00000470076 RTN4Q9NQC3 1192 aaKnown RBP17.62■□□□□ 0.41
COL7A1-208ENST00000470076 PADI4Q9UM07 663 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 SATB2Q9UPW6 733 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 PCDHGA8Q9Y5G5 932 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 ENTPD2Q9Y5L3 495 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 LRP4O75096 1905 aa17.62■□□□□ 0.41
COL7A1-208ENST00000470076 CFAP46Q8IYW2 2715 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 TMEM191CA6NGB0 347 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 LRRC53A6NM62 1247 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 TEX33O43247 280 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 PRPSAP2O60256 369 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 GZMAP12544 262 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ERCC2P18074 760 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 RBMS1P29558 406 aaKnown RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ZNF135P52742 658 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 CXADRP78310 365 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 TYRO3Q06418 890 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 MTM1Q13496 603 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 INPP5AQ14642 412 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 RFTN1Q14699 578 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 KIF26BQ2KJY2 2108 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ALG11Q2TAA5 492 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 AFMIDQ63HM1 303 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ARFGAP1Q8N6T3 406 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ARL10Q8N8L6 244 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 TSEN2Q8NCE0 465 aaKnown RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 KCNE4Q8WWG9 221 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 TSACCQ96A04 125 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 NAF1Q96HR8 494 aaKnown RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 CCDC3Q9BQI4 270 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 CINPQ9BW66 212 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-208ENST00000470076 DPH1Q9BZG8 443 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 EDEM3Q9BZQ6 932 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 SP110Q9HB58 689 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 PCSK1NQ9UHG2 260 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ATMQ13315 3056 aa17.61■□□□□ 0.41
COL7A1-208ENST00000470076 ATMINO43313 823 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 CELA2BP08218 269 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 RGRP47804 291 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 HCAR3P49019 387 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 TMPRSS3P57727 454 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 SRP54P61011 504 aaKnown RBP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 POLR2LP62875 67 aaKnown RBP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 BCL2L1Q07817 233 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 IL10RBQ08334 325 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 NSUN2Q08J23 767 aaKnown RBP eCLIP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 SPIDRQ14159 915 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 ASIC2Q16515 512 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 PPP6R3Q5H9R7 873 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 ENPP7Q6UWV6 458 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 ZSWIM9Q86XI8 627 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 GKN2Q86XP6 184 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 ARHGAP12Q8IWW6 846 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 PCDH19Q8TAB3 1148 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 ECHDC3Q96DC8 303 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 WDR92Q96MX6 357 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 SLC46A1Q96NT5 459 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 PEBP4Q96S96 227 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 KCTD15Q96SI1 283 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-208ENST00000470076 BPIFA3Q9BQP9 254 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 HAUS4Q9H6D7 363 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 GULP1Q9UBP9 304 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 KLQ9UEF7 1012 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms