RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PRF1P14222 555 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 CD19P15391 556 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 NME2P22392 152 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 TNFRSF8P28908 595 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 UGT1A3P35503 534 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 IGFALSP35858 605 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 NNMTP40261 264 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 LIG3P49916 1009 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SNRPFP62306 86 aaKnown RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 BST2Q10589 180 aaKnown RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SLC39A14Q15043 492 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 TAF5Q15542 800 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ARHGAP44Q17R89 818 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 LRRC73Q5JTD7 316 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 FAXCQ5TGI0 409 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 FAM46CQ5VWP2 391 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 FBXL22Q6P050 247 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 NEK5Q6P3R8 708 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 CNNM4Q6P4Q7 775 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SHC4Q6S5L8 630 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 DPY19L3Q6ZPD9 716 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ERN2Q76MJ5 926 aaKnown RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 BRAPQ7Z569 592 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 RELL1Q8IUW5 271 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SLITRK4Q8IW52 837 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 UNC5BQ8IZJ1 945 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ZSCAN1Q8NBB4 408 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PHC3Q8NDX5 983 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 C9orf43Q8TAL5 461 aaPredicted RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SSC4DQ8WTU2 575 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SLC35F5Q8WV83 523 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 KCTD13Q8WZ19 329 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ERCC4Q92889 916 aaPredicted RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 RHOVQ96L33 236 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 FEM1AQ9BSK4 669 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ZSCAN16Q9H4T2 348 aaPredicted RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 RDH14Q9HBH5 336 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ANLNQ9NQW6 1124 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SEPT10Q9P0V9 454 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SPASTQ9UBP0 616 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 IPO11Q9UI26 975 aaKnown RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PCDHGB7Q9Y5F8 929 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 FADS3Q9Y5Q0 445 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SNX10Q9Y5X0 201 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 SVILO95425 2214 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PDZD2O15018 2839 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ZFHX3Q15911 3703 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 HIVEP1P15822 2718 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 A0A0D9SEW6 157 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 LOC101059948A0A1B0GTJ6 334 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 A0A1W2PQ27 194 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 A0A1W2PQ64 194 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 A0A1W2PQC6 194 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 WIPF3A6NGB9 483 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 I6L893 689 aaPredicted RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 LINC01387J3KSC0 135 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 IKBKBO14920 756 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 ALOX15BO15296 676 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 FURINP09958 794 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 ADRB3P13945 408 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 BMP6P22004 513 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 EIF4A3P38919 411 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 RABIFP47224 123 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 RIPPLY3P57055 190 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 LRMPQ12912 555 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 EIF3IQ13347 325 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 EIF4EBP2Q13542 120 aaPredicted RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 ALG11Q2TAA5 492 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 EIF2S3LQ2VIR3 472 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 DEFB109BQ30KR1 87 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 ALFQ53S48 1182 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 PRR30Q53SZ7 412 aaPredicted RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 ARTNQ5T4W7 220 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 PHF19Q5T6S3 580 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 FHL5Q5TD97 284 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 C1QL3Q5VWW1 255 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 PARS2Q7L3T8 475 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 TIPARPQ7Z3E1 657 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 RD3Q7Z3Z2 195 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 VPS36Q86VN1 386 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 DCP2Q8IU60 420 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 TICAM1Q8IUC6 712 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 HID1Q8IV36 788 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 SIX6OS1Q8N1H7 587 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 DTWD1Q8N5C7 304 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 UBR7Q8N806 425 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 NETO2Q8NC67 525 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 TMIEQ8NEW7 156 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 GPR156Q8NFN8 814 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 CCL4L1Q8NHW4 92 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 SPATA20Q8TB22 786 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 PDCD6IPQ8WUM4 868 aaKnown RBP5.36□□□□□ -1.55
PTPN4-209ENST00000469511 KAT5Q92993 513 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 NAT6Q93015 286 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 CENPTQ96BT3 561 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 TCTN2Q96GX1 697 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 STRADBQ9C0K7 418 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 ACBD3Q9H3P7 528 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 CNGB3Q9NQW8 809 aa5.36□□□□□ -1.55
PTPN4-209ENST00000469511 VPS51Q9UID3 782 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms