RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 GPR34Q9UPC5 381 aa22.82■■□□□ 1.24
USP4-208ENST00000464168 MAST4O15021 2626 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 TCRBV5S1A1TA0A578 114 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 CCP110O43303 1012 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 CREB3O43889 395 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 RASGRP1O95267 797 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 STAT1P42224 750 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 ZNF143P52747 638 aaPredicted RBP22.81■■□□□ 1.24
USP4-208ENST00000464168 SRP54P61011 504 aaKnown RBP22.81■■□□□ 1.24
USP4-208ENST00000464168 CCL7P80098 99 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 CDKAL1Q5VV42 579 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 SDR16C5Q8N3Y7 309 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 ENOX1Q8TC92 643 aaKnown RBP22.81■■□□□ 1.24
USP4-208ENST00000464168 NCAPGQ9BPX3 1015 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 NUP62CLQ9H1M0 184 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 FZD10Q9ULW2 581 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 SIK3Q9Y2K2 1263 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 DAAM1Q9Y4D1 1078 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 OR1A2Q9Y585 309 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 BOD1L1Q8NFC6 3051 aa22.81■■□□□ 1.24
USP4-208ENST00000464168 A0A1W2PQM1 296 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 B8ZZF3 427 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 PLD2O14939 933 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 EFSO43281 561 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 BUB1BO60566 1050 aaPredicted RBP22.8■■□□□ 1.24
USP4-208ENST00000464168 CALB1P05937 261 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 HTR1BP28222 390 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 LIG3P49916 1009 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 AGERQ15109 404 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 KCTD16Q68DU8 428 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 MON1BQ7L1V2 547 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 GKN2Q86XP6 184 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 DNAAF5Q86Y56 855 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 MED8Q96G25 268 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 GFM1Q96RP9 751 aaKnown RBP22.8■■□□□ 1.24
USP4-208ENST00000464168 CCNL2Q96S94 520 aaPredicted RBP22.8■■□□□ 1.24
USP4-208ENST00000464168 FOXP3Q9BZS1 431 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 CATSPERBQ9H7T0 1116 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 PDFQ9HBH1 243 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 EPB41L5Q9HCM4 733 aa22.8■■□□□ 1.24
USP4-208ENST00000464168 UBA2Q9UBT2 640 aaPredicted RBP22.8■■□□□ 1.24
USP4-208ENST00000464168 SPTA1P02549 2419 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 D6RAR5 112 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 J3KR12 359 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 SLC5A2P31639 672 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 UGT1A5P35504 534 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 RPL7AP62424 266 aaKnown RBP22.79■■□□□ 1.24
USP4-208ENST00000464168 GRM3Q14832 879 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 ZSCAN23Q3MJ62 389 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 RAB11FIP2Q7L804 512 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 ZSWIM9Q86XI8 627 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 FBXO39Q8N4B4 442 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 ZNF641Q96N77 438 aaPredicted RBP22.79■■□□□ 1.24
USP4-208ENST00000464168 LRRC19Q9H756 370 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.79■■□□□ 1.24
USP4-208ENST00000464168 KLQ9UEF7 1012 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 PCDHGA7Q9Y5G6 932 aa22.79■■□□□ 1.24
USP4-208ENST00000464168 TMX2-CTNND1H3BSU7 103 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 RPLP0P05388 317 aaKnown RBP22.78■■□□□ 1.24
USP4-208ENST00000464168 MMP12P39900 470 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 AIF1P55008 147 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 EIF3IQ13347 325 aaKnown RBP22.78■■□□□ 1.24
USP4-208ENST00000464168 PPP1R15BQ5SWA1 713 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 FKBP15Q5T1M5 1219 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 ERAP2Q6P179 960 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 BRAT1Q6PJG6 821 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 CAMK1DQ8IU85 385 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 PLA2G15Q8NCC3 412 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 GPR156Q8NFN8 814 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 WDR92Q96MX6 357 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 RBM15Q96T37 977 aaKnown RBP eCLIP22.78■■□□□ 1.24
USP4-208ENST00000464168 CNPY3Q9BT09 278 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 STRADBQ9C0K7 418 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 LRRN3Q9H3W5 708 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 ATXN7L1Q9ULK2 861 aaPredicted RBP22.78■■□□□ 1.24
USP4-208ENST00000464168 ATP8A1Q9Y2Q0 1164 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 DGKBQ9Y6T7 804 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 HECTD1Q9ULT8 2610 aa22.78■■□□□ 1.24
USP4-208ENST00000464168 TLN1Q9Y490 2541 aaKnown RBP22.77■■□□□ 1.24
USP4-208ENST00000464168 FGF10O15520 208 aaPredicted RBP22.77■■□□□ 1.24
USP4-208ENST00000464168 NOBOXO60393 691 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 PRAMEF11O60813 436 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 PRKCGP05129 697 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 PCCBP05166 539 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 INHBCP55103 352 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 MTM1Q13496 603 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 DNAJC24Q6P3W2 148 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 OR6C4Q8NGE1 309 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 ATL2Q8NHH9 583 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 PDXPQ96GD0 296 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 MCEEQ96PE7 176 aa22.77■■□□□ 1.24
USP4-208ENST00000464168 LRRK1Q38SD2 2015 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 TNFP01375 233 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 KRT10P13645 584 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 HGFP14210 728 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 CCKBRP32239 447 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 RGRP47804 291 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 SYCP1Q15431 976 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 OGFOD3Q6PK18 319 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 OR1E3Q8WZA6 343 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms