RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CLEC20AQ6ZU45 233 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PARP8Q8N3A8 854 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 HEXDCQ8WVB3 486 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 SEPHS2Q99611 448 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 NAT9Q9BTE0 207 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF696Q9H7X3 374 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 OLAHQ9NV23 265 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PCDHGA7Q9Y5G6 932 aa12.52□□□□□ -0.41
HDAC4-208ENST00000463007 PPP6CO00743 305 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 MPOP05164 745 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 USP17L7P0C7H9 530 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 MTHFD1P11586 935 aaKnown RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 NCK1P16333 377 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CD68P34810 354 aaPredicted RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 SH3BGRP55822 239 aaPredicted RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 ITKQ08881 620 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 BNIP3Q12983 259 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 RAB41Q5JT25 222 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 TBCELQ5QJ74 424 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 ZYG11AQ6WRX3 759 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CHSY3Q70JA7 882 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 ZC3HC1Q86WB0 502 aaKnown RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 RHOBTB2Q9BYZ6 727 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CPA4Q9UI42 421 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CNOT6Q9ULM6 557 aaKnown RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 NUP214P35658 2090 aaPredicted RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 HACD1B0YJ81 288 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 SDHDO14521 159 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 AP2A1O95782 977 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CPT1AP50416 773 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 TKTL1P51854 596 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 VPS26BQ4G0F5 336 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 STXBP5Q5T5C0 1151 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CST9Q5W186 159 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 REP15Q6BDI9 236 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 C16orf87Q6PH81 154 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 SCIMPQ6UWF3 145 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 DPF3Q92784 378 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 C12orf43Q96C57 262 aaKnown RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 EIF2B3Q9NR50 452 aaKnown RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 MEIS3P2A8K0S8 358 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 TMEM114B3SHH9 223 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 HTRA2O43464 458 aaPredicted RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 NPR3P17342 541 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 PAN2Q504Q3 1202 aaKnown RBP12.51□□□□□ -0.41
HDAC4-208ENST00000463007 SLC44A4Q53GD3 710 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 TMEM26Q6ZUK4 368 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 MFSD6LQ8IWD5 586 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 DDIASQ8IXT1 998 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 DCBLD1Q8N8Z6 715 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 KDM1BQ8NB78 822 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 DNAJB14Q8TBM8 379 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 FICDQ9BVA6 458 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 CRTAC1Q9NQ79 661 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 THEGQ9P2T0 379 aa12.51□□□□□ -0.41
HDAC4-208ENST00000463007 LRRC14BA6NHZ5 514 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 YJEFN3A6XGL0 299 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 HHLA1C9JL84 531 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 FBP2O00757 339 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 DCLK1O15075 740 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 KCNH1O95259 989 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 MOCS2O96007 188 aaPredicted RBP12.5□□□□□ -0.41
HDAC4-208ENST00000463007 GLUD2P49448 558 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 SCAPQ12770 1279 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 SLC12A1Q13621 1099 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 PAFAH1B3Q15102 231 aaKnown RBP12.5□□□□□ -0.41
HDAC4-208ENST00000463007 FGD3Q5JSP0 725 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 HMBOX1Q6NT76 420 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 TMEM135Q86UB9 458 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 DHFR2Q86XF0 187 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 CHERPQ8IWX8 916 aaKnown RBP12.5□□□□□ -0.41
HDAC4-208ENST00000463007 OR6P1Q8NGX9 317 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 MAGEE2Q8TD90 523 aaPredicted RBP12.5□□□□□ -0.41
HDAC4-208ENST00000463007 SLCO4A1Q96BD0 722 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 TNIP3Q96KP6 325 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 WDR6Q9NNW5 1121 aaKnown RBP12.5□□□□□ -0.41
HDAC4-208ENST00000463007 CACNA2D2Q9NY47 1150 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 NCKIPSDQ9NZQ3 722 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 CRYL1Q9Y2S2 319 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 AP1G1O43747 822 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 CCDC166P0CW27 439 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 CD247P20963 164 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 PRDX6P30041 224 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 BEX3Q00994 111 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 PRKCQQ04759 706 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 APOFQ13790 326 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 ARTNQ5T4W7 220 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 C17orf99Q6UX52 265 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 FIBCD1Q8N539 461 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 ZMIZ2Q8NF64 920 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 OR52K2Q8NGK3 314 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 ZFP42Q96MM3 310 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 PLEKHG4BQ96PX9 1271 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 ULBP1Q9BZM6 244 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 OSBPL2Q9H1P3 480 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 ALG9Q9H6U8 611 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 POLR1BQ9H9Y6 1135 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 PFDN4Q9NQP4 134 aa12.5□□□□□ -0.41
HDAC4-208ENST00000463007 EVLQ9UI08 416 aaPredicted RBP12.5□□□□□ -0.41
HDAC4-208ENST00000463007 INPP4BO15327 924 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms