RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 AASDHPPTQ9NRN7 309 aa10.77□□□□□ -0.68
UBR4-208ENST00000459947 EVA1BQ9NVM1 165 aa10.77□□□□□ -0.68
UBR4-208ENST00000459947 SERGEFQ9UGK8 458 aa10.77□□□□□ -0.68
UBR4-208ENST00000459947 EIF2B4Q9UI10 523 aaKnown RBP10.77□□□□□ -0.68
UBR4-208ENST00000459947 TRAFD1O14545 582 aaPredicted RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 LZTS3O60299 673 aaPredicted RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 KELP23276 732 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ITPKAP23677 461 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 PTGER3P43115 390 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 SLC14A1Q13336 389 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ARMC3Q5W041 872 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 REXO1L1PQ8IX06 675 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 NRSN1Q8IZ57 195 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ZCCHC9Q8N567 271 aaKnown RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 OR6K2Q8NGY2 324 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 SERAC1Q96JX3 654 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 SPATA13Q96N96 652 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 MCCC1Q96RQ3 725 aaPredicted RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 RTKNQ9BST9 563 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 TDRD1Q9BXT4 1180 aaKnown RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 PCDH9Q9HC56 1237 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 TM9SF3Q9HD45 589 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 RSPH14Q9UHP6 348 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ACTL7AQ9Y615 435 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 C5orf60A6NFR6 353 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 FAM47DPA6NHR8 397 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ERI2A8K979 691 aaKnown RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 AP3B1O00203 1094 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 RNF103O00237 685 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ARHGAP33O14559 1287 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 PIGNO95427 931 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 PECAM1P16284 738 aaPredicted RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 HLA-DPA1P20036 260 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 TAS2R38P59533 333 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 KLF1Q13351 362 aaPredicted RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 LAMB3Q13751 1172 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 CCNG2Q16589 344 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 NPNTQ6UXI9 565 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ALYREFQ86V81 257 aaKnown RBP10.77□□□□□ -0.69
UBR4-208ENST00000459947 CAMK1DQ8IU85 385 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 ARRDC2Q8TBH0 407 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 TBATAQ96M53 351 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 LYSMD1Q96S90 227 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 C19orf43Q9BQ61 176 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 GBA3Q9H227 469 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 PCDH12Q9NPG4 1184 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 GDF3Q9NR23 364 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 RNF14Q9UBS8 474 aa10.77□□□□□ -0.69
UBR4-208ENST00000459947 SHROOM3Q8TF72 1996 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 NDST3O95803 873 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 FDFT1P37268 417 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 RGRP47804 291 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 MTM1Q13496 603 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 ZNF284Q2VY69 593 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 PID1Q7Z2X4 250 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 PGBD5Q8N414 524 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 CCHCR1Q8TD31 782 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 KLHDC7BQ96G42 594 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 EDEM2Q9BV94 578 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.76□□□□□ -0.69
UBR4-208ENST00000459947 DRG1Q9Y295 367 aaKnown RBP10.76□□□□□ -0.69
UBR4-208ENST00000459947 TTLL3Q9Y4R7 772 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 FZD6O60353 706 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 HOXC4P09017 264 aaPredicted RBP10.76□□□□□ -0.69
UBR4-208ENST00000459947 ELFN1P0C7U0 828 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 PRLRP16471 622 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 ZNF569Q5MCW4 686 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 ARHGEF18Q6ZSZ5 1173 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 TP53INP2Q8IXH6 220 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 SLC35B2Q8TB61 432 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 ERLEC1Q96DZ1 483 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 SCRN2Q96FV2 425 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 KCNF1Q9H3M0 494 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 KCNK1O00180 336 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 MUSKO15146 869 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 FGF1P05230 155 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 SKOR1P84550 965 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 DSC2Q02487 901 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 TRAF2Q12933 501 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 ZC3H18Q86VM9 953 aaKnown RBP10.76□□□□□ -0.69
UBR4-208ENST00000459947 C1orf216Q8TAB5 229 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 TADA1Q96BN2 335 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 PKD2L2Q9NZM6 624 aa10.76□□□□□ -0.69
UBR4-208ENST00000459947 CDV3Q9UKY7 258 aaKnown RBP10.76□□□□□ -0.69
UBR4-208ENST00000459947 CAPN8A6NHC0 703 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 NDC80O14777 642 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 ARRB1P49407 418 aaPredicted RBP10.75□□□□□ -0.69
UBR4-208ENST00000459947 NUMBP49757 651 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 CCT8P50990 548 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 CDK18Q07002 472 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 ZNF423Q2M1K9 1284 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 POM121L1PQ3SYA9 428 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 GRK7Q8WTQ7 553 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 RTP4Q96DX8 246 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 MLPHQ9BV36 600 aaPredicted RBP10.75□□□□□ -0.69
UBR4-208ENST00000459947 TLR10Q9BXR5 811 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 DNAAF2Q9NVR5 837 aaKnown RBP10.75□□□□□ -0.69
UBR4-208ENST00000459947 NFKBIL1Q9UBC1 381 aaPredicted RBP10.75□□□□□ -0.69
UBR4-208ENST00000459947 PCDHB9Q9Y5E1 797 aa10.75□□□□□ -0.69
UBR4-208ENST00000459947 A0A0J9YYE9 177 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms