RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 USP9YO00507 2555 aaPredicted RBP16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 AGRPO00253 132 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 KDELR3O43731 214 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 CCL4P13236 92 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 RHOQP17081 205 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 ARSDP51689 593 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 APBA1Q02410 837 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 ELP6Q0PNE2 266 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 ARHGEF7Q14155 803 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 CLPPQ16740 277 aaPredicted RBP16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 PHF19Q5T6S3 580 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 KCTD16Q68DU8 428 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 TRNP1Q6NT89 227 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 ARCQ7LC44 396 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 SLC47A2Q86VL8 602 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM131BQ86XD5 332 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 XYLT1Q86Y38 959 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM46DQ8NEK8 389 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 GPBAR1Q8TDU6 330 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 WDR92Q96MX6 357 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 GDAP1L1Q96MZ0 367 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 PLCB1Q9NQ66 1216 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 OR12D3Q9UGF7 316 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 DNAI1Q9UI46 699 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 TMEM59LQ9UK28 342 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 COQ6Q9Y2Z9 468 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 OR1A2Q9Y585 309 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 LRP4O75096 1905 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 NBASA2RRP1 2371 aa16.88■□□□□ 0.29
CHCHD3-202ENST00000423635 ZSCAN5CA6NGD5 496 aaPredicted RBP16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 FOXN3O00409 490 aaPredicted RBP16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 HGSO14964 777 aaPredicted RBP16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 B4GAT1O43505 415 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 CPNE6O95741 557 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 CCR10P46092 362 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 ATP1A2P50993 1020 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 INO80DQ53TQ3 878 aaPredicted RBP16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 EFHC2Q5JST6 749 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM102AQ5T9C2 384 aaPredicted RBP16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 GBP6Q6ZN66 633 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 TAF8Q7Z7C8 310 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 PIM3Q86V86 326 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 SFTPA2Q8IWL1 248 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM26EQ8N5C1 309 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 TMEM35BQ8NCS4 154 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 CASKIN2Q8WXE0 1202 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 PDXPQ96GD0 296 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 CFAP57Q96MR6 1250 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 TAAR9Q96RI9 348 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 LRRK1Q38SD2 2015 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 SDK2Q58EX2 2172 aa16.87■□□□□ 0.29
CHCHD3-202ENST00000423635 GTPBP10A4D1E9 387 aaKnown RBP16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 TMCC1O94876 653 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 ADRA1BP35368 520 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 MTM1Q13496 603 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 UGP2Q16851 508 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 LEKR1Q6ZMV7 388 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 C17orf82Q86X59 251 aaPredicted RBP16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 OR56A4Q8NGH8 313 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 JPH3Q8WXH2 748 aaPredicted RBP16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 HMCESQ96FZ2 354 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 CATSPER2Q96P56 530 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 CTNND2Q9UQB3 1225 aa16.86■□□□□ 0.29
CHCHD3-202ENST00000423635 TSPAN11A1L157 253 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 TMEM202A6NGA9 273 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 TNFRSF10CO14798 259 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 BUB1O43683 1085 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 RAMP2O60895 175 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 FGFR1OPO95684 399 aaKnown RBP16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 IGSF6O95976 241 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 HOXC4P09017 264 aaPredicted RBP16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 FGF3P11487 239 aaPredicted RBP16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 PON1P27169 355 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 STX17P56962 302 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 KIAA1024LP59773 190 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 BPIFB4P59827 614 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 NR1D2Q14995 579 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 NCAPHQ15003 741 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 EXOC3L4Q17RC7 722 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 MAP9Q49MG5 647 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 C4orf17Q53FE4 359 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 RWDD4Q6NW29 188 aaKnown RBP16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 ZNF438Q7Z4V0 828 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM71AQ8IYT1 594 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 OR1E3Q8WZA6 343 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 DPEP2Q9H4A9 486 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 RDH14Q9HBH5 336 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 AJAP1Q9UKB5 411 aaPredicted RBP16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 NEU3Q9UQ49 428 aa16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 ZFC3H1O60293 1989 aaKnown RBP16.85■□□□□ 0.29
CHCHD3-202ENST00000423635 CFAP69A5D8W1 941 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM72CH0Y354 149 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 LIFP15018 202 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 XPAP23025 273 aaPredicted RBP16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 UGT1A3P35503 534 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 LIG3P49916 1009 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 PAK1Q13153 545 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM72AQ5TYM5 149 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 SPECC1LQ69YQ0 1117 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 FAM72DQ6L9T8 149 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms