RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CCDC15Q0P6D6 951 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 NFATC3Q12968 1075 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 SPIDRQ14159 915 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 ALG11Q2TAA5 492 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 FAXCQ5TGI0 409 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 RWDD4Q6NW29 188 aaKnown RBP13.05□□□□□ -0.32
LINC00339-202ENST00000416769 TRIM72Q6ZMU5 477 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC81Q6ZN84 652 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 PRICKLE2Q7Z3G6 844 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 ZNF571Q7Z3V5 609 aaPredicted RBP13.05□□□□□ -0.32
LINC00339-202ENST00000416769 VASH2Q86V25 355 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 TMTC1Q8IUR5 882 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 PYROXD2Q8N2H3 581 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC185Q8N715 623 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 TMEM35BQ8NCS4 154 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 WDR36Q8NI36 951 aaKnown RBP13.05□□□□□ -0.32
LINC00339-202ENST00000416769 EXOC2Q96KP1 924 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 HAPLN3Q96S86 360 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 CHP1Q99653 195 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 EPAS1Q99814 870 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 PDCL3Q9H2J4 239 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 CLMPQ9H6B4 373 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 RRN3Q9NYV6 651 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 BSNQ9UPA5 3926 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC187A0A096LP49 1063 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 TMCC1O94876 653 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 LRIG2O94898 1065 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 PIGNO95427 931 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 CYP1A1P04798 512 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ANXA6P08133 673 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 GZMAP12544 262 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 TIMP2P16035 220 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ITIH1P19827 911 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 UGT1A5P35504 534 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ETV5P41161 510 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 NOMO3P69849 1222 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 MTA1Q13330 715 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ASTE1Q2TB18 679 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-202ENST00000416769 MYLK3Q32MK0 819 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ARL13BQ3SXY8 428 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC14Q49A88 953 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 TDRD12Q587J7 1177 aaKnown RBP13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ZNF783Q6ZMS7 281 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 RD3Q7Z3Z2 195 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 TMPRSS9Q7Z410 1059 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ZSWIM9Q86XI8 627 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 JAMLQ86YT9 394 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ZDHHC17Q8IUH5 632 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 HID1Q8IV36 788 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 LRRC8AQ8IWT6 810 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 DENND6BQ8NEG7 585 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 OR2AP1Q8NGE2 309 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 SLC30A5Q8TAD4 765 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 EXTL1Q92935 676 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 BAG1Q99933 345 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-202ENST00000416769 NHEJ1Q9H9Q4 299 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-202ENST00000416769 ATXN7L1Q9ULK2 861 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-202ENST00000416769 OR1A2Q9Y585 309 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 NBASA2RRP1 2371 aa13.04□□□□□ -0.32
LINC00339-202ENST00000416769 COL12A1Q99715 3063 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 D6RAR5 112 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PLD2O14939 933 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 TCEA3O75764 348 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 GSRP00390 522 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 F9P00740 461 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 RPLP0P05388 317 aaKnown RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 ITGA2BP08514 1039 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PLEKP08567 350 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 UNGP13051 313 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 CYP4F2P78329 520 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PPARDQ03181 441 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 SLC20A2Q08357 652 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 WSCD2Q2TBF2 565 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PPP1R2P3Q6NXS1 205 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 GDPD4Q6W3E5 623 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 MACC1Q6ZN28 852 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC170Q8IYT3 715 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 ARL14Q8N4G2 192 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 Q8N9G6 341 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC112Q8NEF3 446 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 FAM174AQ8TBP5 190 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 RXFP2Q8WXD0 754 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PDXPQ96GD0 296 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC42Q96M95 316 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 CCNL2Q96S94 520 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PCDHB18PQ96TA0 734 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 CPEB1Q9BZB8 566 aaKnown RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 SLC13A1Q9BZW2 595 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 EVA1BQ9NVM1 165 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PPARGC1AQ9UBK2 798 aaKnown RBP13.03□□□□□ -0.32
LINC00339-202ENST00000416769 PISDQ9UG56 409 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 OR12D3Q9UGF7 316 aa13.03□□□□□ -0.32
LINC00339-202ENST00000416769 DDX3XO00571 662 aaKnown RBP eCLIP13.02□□□□□ -0.332e-7■■□□□ 13.2
LINC00339-202ENST00000416769 ARHGAP6O43182 974 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 TM7SF2O76062 418 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 WISP1O95388 367 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 LSM8O95777 96 aaKnown RBP13.02□□□□□ -0.33
LINC00339-202ENST00000416769 PTMAP06454 111 aaKnown RBP13.02□□□□□ -0.33
LINC00339-202ENST00000416769 FAM87AP0C7U9 286 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 ADRA1BP35368 520 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms