RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 MUC3BQ9H195 1237 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 MRPL46Q9H2W6 279 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 LIN28AQ9H9Z2 209 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 TRPC7Q9HCX4 862 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ATP6AP2A0A1C7CYW4 349 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 C9JVG2 144 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 TRIM38O00635 465 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 B4GALT3O60512 393 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 PAGE1O75459 146 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 ATP6AP2O75787 350 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 CLPTM1O96005 669 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 STMN1P16949 149 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 ADSLP30566 484 aaPredicted RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 ZFP36L2P47974 494 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 TRIM25Q14258 630 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 SEMA3AQ14563 771 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 UPP1Q16831 310 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 IQSEC1Q6DN90 963 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 ITPRIPL1Q6GPH6 555 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 ZNF549Q6P9A3 640 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 PGBD5Q8N414 524 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 MYEOVQ96EZ4 313 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 VAT1Q99536 393 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 ABHD16BQ9H3Z7 469 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 TUBB1Q9H4B7 451 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 EFCAB1Q9HAE3 211 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 FBXO5Q9UKT4 447 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 TNFRSF10BO14763 440 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 MATN3O15232 486 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 MGEA5O60502 916 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 GNAO1P09471 354 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 CDK4P11802 303 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 GPX3P22352 226 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 BRCC3P46736 316 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 PSEN2P49810 448 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 HK2P52789 917 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 CRYBB1P53674 252 aaPredicted RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 TXNL4AP83876 142 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.93□□□□□ -0.82
SS18-203ENST00000415083 RWDD4Q6NW29 188 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 ZFP1Q6P2D0 407 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 CYP2R1Q6VVX0 501 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 CUZD1Q86UP6 607 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 RNF135Q8IUD6 432 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 PHF21BQ96EK2 531 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 DUS3LQ96G46 650 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 MRPL57Q9BQC6 102 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 GPATCH1Q9BRR8 931 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 VCX3BQ9H321 246 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 CCDC167Q9P0B6 97 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 SUCOQ9UBS9 1254 aaKnown RBP9.93□□□□□ -0.82
SS18-203ENST00000415083 PHF24Q9UPV7 400 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 GREB1Q4ZG55 1949 aa9.93□□□□□ -0.82
SS18-203ENST00000415083 ARL5CA6NH57 179 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 J3KR12 359 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 FXYD1O00168 92 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 PRSS56P0CW18 603 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 CPB1P15086 417 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 CKMT2P17540 419 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 HADHAP40939 763 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 NDST2P52849 883 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 SETMARQ53H47 684 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 UNC50Q53HI1 259 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 NHSL2Q5HYW2 709 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 ISCA2Q86U28 154 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 MYO1HQ8N1T3 1032 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 LRGUKQ96M69 825 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 MRPS26Q9BYN8 205 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 DDX18Q9NVP1 670 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 UTP6Q9NYH9 597 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 CNOT6Q9ULM6 557 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 CHD5Q8TDI0 1954 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 IRAK2O43187 625 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 HAPLN1P10915 354 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 CDH2P19022 906 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 CHRM3P20309 590 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 LEPRP48357 1165 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 ALDH3B2P48448 385 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 SCNN1GP51170 649 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 MAXP61244 160 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 SH3BP2P78314 561 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 RHDQ02161 417 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 PIK3R6Q5UE93 754 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 LAYNQ6UX15 382 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 DPP9Q86TI2 863 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 HASPINQ8TF76 798 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 MRM3Q9HC36 420 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 GTSE1Q9NYZ3 720 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 PTTG2Q9NZH5 202 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 EPS15L1Q9UBC2 864 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 CNOT11Q9UKZ1 510 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 HS3ST4Q9Y661 456 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 VWA8A3KMH1 1905 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 ASPDHA6ND91 283 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 MTSS1O43312 755 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 IGHA2P01877 340 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 ATP5F1P24539 256 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 DNAJB1P25685 340 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 CDH15P55291 814 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 PDAP1Q13442 181 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms