RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 CES2O00748 559 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 FFAR3O14843 346 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 AIM2O14862 343 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 GPR42O15529 346 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 CTSEP14091 401 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 YBEYP58557 167 aaPredicted RBP11.47□□□□□ -0.57
SNX13-202ENST00000409604 PTP4A2Q12974 167 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 CAPRIN1Q14444 709 aaKnown RBP11.47□□□□□ -0.57
SNX13-202ENST00000409604 TMEM31Q5JXX7 168 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 PRAMEF14Q5SWL7 426 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 C2orf15Q8WU43 125 aaKnown RBP11.47□□□□□ -0.57
SNX13-202ENST00000409604 PIF1Q9H611 641 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 CA14Q9ULX7 337 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 ASB3Q9Y575 518 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 NDUFS2O75306 463 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 DSG1Q02413 1049 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 RAB33AQ14088 237 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 MSS51Q4VC12 460 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 SNAP47Q5SQN1 464 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 FOXR1Q6PIV2 292 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 ERP27Q96DN0 273 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 SERAC1Q96JX3 654 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 HAPLN3Q96S86 360 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 FAM167BQ9BTA0 163 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 ROPN1BQ9BZX4 212 aaPredicted RBP11.47□□□□□ -0.57
SNX13-202ENST00000409604 MAGEH1Q9H213 219 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 ZNF576Q9H609 170 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 ACTR8Q9H981 624 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 ROPN1Q9HAT0 212 aaPredicted RBP11.47□□□□□ -0.57
SNX13-202ENST00000409604 SLCO1B3Q9NPD5 702 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 NME7Q9Y5B8 376 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 TET1Q8NFU7 2136 aa11.47□□□□□ -0.57
SNX13-202ENST00000409604 C1QTNF3-AMACRE9PGA6 284 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 ENO3P13929 434 aaPredicted RBP11.46□□□□□ -0.57
SNX13-202ENST00000409604 CEBPBP17676 345 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 PTGIRP43119 386 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 SERPINB8P50452 374 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 CCNHP51946 323 aaPredicted RBP11.46□□□□□ -0.57
SNX13-202ENST00000409604 DSC1Q08554 894 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 EMC10Q5UCC4 262 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 ANKRD33Q7Z3H0 272 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 SPATA21Q7Z572 469 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 PRPF39Q86UA1 669 aaKnown RBP11.46□□□□□ -0.57
SNX13-202ENST00000409604 HERVK_113Q902F9 699 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 ZNF358Q9NW07 568 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 VPS51Q9UID3 782 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 DOCK1Q14185 1865 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 APC2O95996 2303 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 MTA2O94776 668 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 HNRNPLP14866 589 aaKnown RBP eCLIP11.46□□□□□ -0.57
SNX13-202ENST00000409604 HNRNPH2P55795 449 aaKnown RBP11.46□□□□□ -0.57
SNX13-202ENST00000409604 HNRNPDQ14103 355 aaKnown RBP11.46□□□□□ -0.57
SNX13-202ENST00000409604 TTMPQ5BVD1 217 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 MFSD4BQ5TF39 518 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 PDPK2PQ6A1A2 396 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 SLC35B2Q8TB61 432 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 PLD4Q96BZ4 506 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 AP2M1Q96CW1 435 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 RTP3Q9BQQ7 232 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 IMP3Q9NV31 184 aaKnown RBP11.46□□□□□ -0.57
SNX13-202ENST00000409604 ARL15Q9NXU5 204 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 SENP1Q9P0U3 644 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 COQ6Q9Y2Z9 468 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 CLUHO75153 1309 aa11.46□□□□□ -0.57
SNX13-202ENST00000409604 CARNS1A5YM72 827 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 SMAPO00193 183 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 CD3EAPO15446 510 aaKnown RBP11.46□□□□□ -0.58
SNX13-202ENST00000409604 GJB3O75712 270 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 CDK7P50613 346 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 LAMB3Q13751 1172 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 AARS2Q5JTZ9 985 aaKnown RBP11.46□□□□□ -0.58
SNX13-202ENST00000409604 LRIG3Q6UXM1 1119 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 HDDC3Q8N4P3 179 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 OR4L1Q8NH43 312 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 FGF13Q92913 245 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 IRF7Q92985 503 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 MARK4Q96L34 752 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 SPASTQ9UBP0 616 aa11.46□□□□□ -0.58
SNX13-202ENST00000409604 CFAP20Q9Y6A4 193 aaKnown RBP11.46□□□□□ -0.58
SNX13-202ENST00000409604 HAUS5O94927 633 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 PRAMEF1O95521 474 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 PCNAP12004 261 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 ARSAP15289 507 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 TFEBP19484 476 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 CCNCP24863 283 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 CD70P32970 193 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 CREB5Q02930 508 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 PTPRRQ15256 657 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 E2F5Q15329 346 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 TTC31Q49AM3 519 aaPredicted RBP11.45□□□□□ -0.58
SNX13-202ENST00000409604 RNASEH2BQ5TBB1 312 aaKnown RBP11.45□□□□□ -0.58
SNX13-202ENST00000409604 FAM171BQ6P995 826 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 SLC44A2Q8IWA5 706 aaPredicted RBP11.45□□□□□ -0.58
SNX13-202ENST00000409604 ZDHHC14Q8IZN3 488 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 CELF5Q8N6W0 485 aaKnown RBP11.45□□□□□ -0.58
SNX13-202ENST00000409604 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.45□□□□□ -0.58
SNX13-202ENST00000409604 NCLNQ969V3 563 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 PPP1R2P1Q96PQ5 205 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 VIPAS39Q9H9C1 493 aa11.45□□□□□ -0.58
SNX13-202ENST00000409604 CYLDQ9NQC7 956 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms