RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ZDHHC24Q6UX98 284 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 SRLQ86TD4 932 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 PRPF39Q86UA1 669 aaKnown RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 ZNF598Q86UK7 904 aaKnown RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 CAMK1DQ8IU85 385 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3Q8IZP1 549 aaPredicted RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 CELF5Q8N6W0 485 aaKnown RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 RFWD2Q8NHY2 731 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 FAM45AQ8TCE6 357 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 SAMD11Q96NU1 681 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 ACOX2Q99424 681 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 HEPHQ9BQS7 1158 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 SYT11Q9BT88 431 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 HERC2P3Q9BVR0 1158 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 NKX2-4Q9H2Z4 354 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 RHOJQ9H4E5 214 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 ARL15Q9NXU5 204 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TDRKHQ9Y2W6 561 aaKnown RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 TMEM247A6NEH6 219 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 KATNA1O75449 491 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 CATP04040 527 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 PRNPP04156 253 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 LTA4HP09960 611 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 DDX6P26196 483 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIG4-202ENST00000405925 NTHL1P78549 312 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 PHEXP78562 749 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 DSG1Q02413 1049 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SLC20A2Q08357 652 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 GRM3Q14832 879 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 GALNTL6Q49A17 601 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 TRMT10BQ6PF06 316 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 KYAT3Q6YP21 454 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 ZNF572Q7Z3I7 529 aaPredicted RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 C11orf96Q7Z7L8 435 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 RTN4RL1Q86UN2 441 aaPredicted RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 OOSP2Q86WS3 158 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 GPSM1Q86YR5 675 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SERAC1Q96JX3 654 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 KLHL32Q96NJ5 620 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 FCRL5Q96RD9 977 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 C17orf80Q9BSJ5 609 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SNX15Q9NRS6 342 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 CLCA2Q9UQC9 943 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 TCAF1Q9Y4C2 921 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 GRXCR1A8MXD5 290 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 E9PBE3 544 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 KLHL41O60662 606 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 RPP40O75818 363 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 KLHL2O95198 593 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 NMBRP28336 390 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SEC13P55735 322 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 RAB10P61026 200 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 ERVK-21P61565 698 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 DSC1Q08554 894 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 GALNT2Q10471 571 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 PFKFB4Q16877 469 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 TRABD2AQ86V40 505 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 LMNTD2Q8IXW0 634 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 RNF217Q8TC41 542 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 ZNF398Q8TD17 642 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SLC44A1Q8WWI5 657 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 MRPL46Q9H2W6 279 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 EBF3Q9H4W6 596 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 ELOVL6Q9H5J4 265 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 STN1Q9H668 368 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 ZNF212Q9UDV6 495 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SLC13A4Q9UKG4 626 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 ANKRD6Q9Y2G4 727 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 VWA7Q9Y334 891 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 TUBGCP6Q96RT7 1819 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 MYH15Q9Y2K3 1946 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 B2RBV5 119 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 PRMT5O14744 637 aaPredicted RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 ZBTB14O43829 449 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 H2AFYO75367 372 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 RB1P06400 928 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 C2P06681 752 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 TYRP14679 529 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 DGKAP23743 735 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 PGM1P36871 562 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 ECT2LQ008S8 904 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 CCDC157Q569K6 752 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SMYD5Q6GMV2 418 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 BBS7Q8IWZ6 715 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 CYB5D2Q8WUJ1 264 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 OVCA2Q8WZ82 227 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 ZNF75CPQ92670 426 aaPredicted RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 WRAP53Q9BUR4 548 aaKnown RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 ACE2Q9BYF1 805 aaPredicted RBP9.14□□□□□ -0.95
LIG4-202ENST00000405925 KDM4CQ9H3R0 1056 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 RAD18Q9NS91 495 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 XPR1Q9UBH6 696 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 SPASTQ9UBP0 616 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 GNPTGQ9UJJ9 305 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 DYRK1BQ9Y463 629 aa9.14□□□□□ -0.95
LIG4-202ENST00000405925 CCT8L1PA6NM43 557 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ADH5P11766 374 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SOX11P35716 441 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SLC1A6P48664 564 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms