RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 ETFBP38117 255 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 PEX5P50542 639 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 SNRPD1P62314 119 aaKnown RBP16.27■□□□□ 0.2
CUX2-202ENST00000397643 CYP4F2P78329 520 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 NRG1Q02297 640 aaPredicted RBP16.27■□□□□ 0.2
CUX2-202ENST00000397643 POLD3Q15054 466 aaPredicted RBP16.27■□□□□ 0.2
CUX2-202ENST00000397643 C2CD6Q53TS8 623 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 DPY19L2P1Q6NXN4 242 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 GDPD4Q6W3E5 623 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 APTXQ7Z2E3 356 aaKnown RBP16.27■□□□□ 0.2
CUX2-202ENST00000397643 TMPRSS9Q7Z410 1059 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 TTC7BQ86TV6 843 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 ZFAND4Q86XD8 727 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 LURAP1LQ8IV03 231 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 CCNJLQ8IV13 435 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 HID1Q8IV36 788 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 FAM71AQ8IYT1 594 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 TMEM35BQ8NCS4 154 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 CXorf40AQ8TE69 158 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 SCG3Q8WXD2 468 aaKnown RBP16.27■□□□□ 0.2
CUX2-202ENST00000397643 WRAP53Q9BUR4 548 aaKnown RBP16.27■□□□□ 0.2
CUX2-202ENST00000397643 DNAJC12Q9UKB3 198 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 DOLKQ9UPQ8 538 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 COQ6Q9Y2Z9 468 aa16.27■□□□□ 0.2
CUX2-202ENST00000397643 C9orf172C9J069 976 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 FAM72CH0Y354 149 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 CBFA2T2O43439 604 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 TMCC1O94876 653 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 RASGRP1O95267 797 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 MAPKAPK2P49137 400 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 UBASH3AP57075 661 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 GEMIN4P57678 1058 aaKnown RBP16.26■□□□□ 0.19
CUX2-202ENST00000397643 UBXN1Q04323 297 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 NFATC4Q14934 902 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 CLCA4Q14CN2 919 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 MANEAQ5SRI9 462 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 CERCAMQ5T4B2 595 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 FAM72AQ5TYM5 149 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 FAM72DQ6L9T8 149 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 ZNF574Q6ZN55 896 aaPredicted RBP16.26■□□□□ 0.19
CUX2-202ENST00000397643 FAM72BQ86X60 149 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 SLITRK4Q8IW52 837 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 SFTPA2Q8IWL1 248 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 OR6C4Q8NGE1 309 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 PDXPQ96GD0 296 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 MAGEB5Q9BZ81 275 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 RTN4Q9NQC3 1192 aaKnown RBP16.26■□□□□ 0.19
CUX2-202ENST00000397643 TMEM248Q9NWD8 314 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 DKK3Q9UBP4 350 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 OR12D3Q9UGF7 316 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 DNAI1Q9UI46 699 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 APPL1Q9UKG1 709 aa16.26■□□□□ 0.19
CUX2-202ENST00000397643 SPENQ96T58 3664 aaKnown RBP16.25■□□□□ 0.19
CUX2-202ENST00000397643 A0A1B0GTH6 734 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 GOLGA8SH3BPF8 625 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 SFTPCP11686 197 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 CTSEP14091 401 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 RHOQP17081 205 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 LRRC14Q15048 493 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 TMEM52BQ4KMG9 183 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 ENPP7Q6UWV6 458 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 ARCQ7LC44 396 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 SPRED1Q7Z699 444 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 GKN2Q86XP6 184 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 NETO2Q8NC67 525 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 TMEM159Q96B96 161 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 GDAP1L1Q96MZ0 367 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 NAP1L5Q96NT1 182 aaPredicted RBP16.25■□□□□ 0.19
CUX2-202ENST00000397643 RBM15Q96T37 977 aaKnown RBP eCLIP16.25■□□□□ 0.19
CUX2-202ENST00000397643 TTYH3Q9C0H2 523 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 MAGEH1Q9H213 219 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 RETREG1Q9H6L5 497 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 NOL6Q9H6R4 1146 aaKnown RBP16.25■□□□□ 0.19
CUX2-202ENST00000397643 IFNKQ9P0W0 207 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 MFHAS1Q9Y4C4 1052 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 SDK2Q58EX2 2172 aa16.25■□□□□ 0.19
CUX2-202ENST00000397643 ANKRD36A6QL64 1941 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 A0A1W2PQC6 194 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 GOLGA6L3A6NEY3 463 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 TMEM110-MUSTN1A8MSY1 372 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.24■□□□□ 0.19
CUX2-202ENST00000397643 AGRPO00253 132 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 INSIG1O15503 277 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 RAMP2O60895 175 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 PPFIA2O75334 1257 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 LRIG2O94898 1065 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 CYP11B1P15538 503 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 ADRA1BP35368 520 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 SRP54P61011 504 aaKnown RBP16.24■□□□□ 0.19
CUX2-202ENST00000397643 ATP11AP98196 1134 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 TLE1Q04724 770 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 NR1I3Q14994 352 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 OGFOD3Q6PK18 319 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 SARM1Q6SZW1 724 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 RD3Q7Z3Z2 195 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 EMC1Q8N766 993 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 Q8N9G6 341 aaPredicted RBP16.24■□□□□ 0.19
CUX2-202ENST00000397643 USP7Q93009 1102 aa16.24■□□□□ 0.19
CUX2-202ENST00000397643 PCMTD1Q96MG8 357 aaPredicted RBP16.24■□□□□ 0.19
CUX2-202ENST00000397643 APOOQ9BUR5 198 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms