RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 COL5A3P25940 1745 aaPredicted RBP16.22■□□□□ 0.19
PCDH1-203ENST00000394536 PTGES3LE9PB15 166 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 CES1P23141 567 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 OCA2Q04671 838 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 TRAF2Q12933 501 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 SLC44A4Q53GD3 710 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 STEAP4Q687X5 459 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 CEP97Q8IW35 865 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 TXNDC5Q8NBS9 432 aaKnown RBP16.22■□□□□ 0.19
PCDH1-203ENST00000394536 DERAQ9Y315 318 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 ARSAP15289 507 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 ITGB6P18564 788 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 UGT1A6P19224 532 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 PSEN2P49810 448 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 MSLNQ13421 630 aaPredicted RBP16.22■□□□□ 0.19
PCDH1-203ENST00000394536 HECTD2Q5U5R9 776 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 FAM91A1Q658Y4 838 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 ADGRG6Q86SQ4 1221 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 TMEM135Q86UB9 458 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 PPP1R10Q96QC0 940 aaKnown RBP16.22■□□□□ 0.19
PCDH1-203ENST00000394536 GPR22Q99680 433 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 BEGAINQ9BUH8 593 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 SLC39A8Q9C0K1 460 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 CLK4Q9HAZ1 481 aaKnown RBP16.22■□□□□ 0.19
PCDH1-203ENST00000394536 CASS4Q9NQ75 786 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 PTTG2Q9NZH5 202 aa16.22■□□□□ 0.19
PCDH1-203ENST00000394536 ZCWPW2A0A1B0GU75 182 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 SLC12A8A0AV02 714 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 BTN3A1O00481 513 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 SCAMP3O14828 347 aaKnown RBP16.21■□□□□ 0.19
PCDH1-203ENST00000394536 SYNCRIPO60506 623 aaKnown RBP16.21■□□□□ 0.19
PCDH1-203ENST00000394536 LDLRP01130 860 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 NCK1P16333 377 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 OR1E1P30953 314 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 DUSP28Q4G0W2 176 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 FBXL19Q6PCT2 694 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 TOP6BLQ8N6T0 577 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 ZFP28Q8NHY6 868 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 RIN3Q8TB24 985 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 PNPLA3Q9NST1 481 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 ARRB2P32121 409 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 ANKS6Q68DC2 871 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 DCLRE1AQ6PJP8 1040 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 SEMA3CQ99985 751 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 TCAF1Q9Y4C2 921 aa16.21■□□□□ 0.19
PCDH1-203ENST00000394536 SOAT2O75908 522 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 SLC35E2BP0CK96 405 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 HOXA11P31270 313 aaPredicted RBP16.21■□□□□ 0.18
PCDH1-203ENST00000394536 NUP107P57740 925 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 DSC2Q02487 901 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 GALNT3Q14435 633 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 PAFAH1B3Q15102 231 aaKnown RBP16.21■□□□□ 0.18
PCDH1-203ENST00000394536 AASDHQ4L235 1098 aaPredicted RBP16.21■□□□□ 0.18
PCDH1-203ENST00000394536 TIGD2Q4W5G0 525 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 ATP6AP1LQ52LC2 224 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 DDHD1Q8NEL9 900 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 KBTBD7Q8WVZ9 684 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 TCF12Q99081 682 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 MTG1Q9BT17 334 aaPredicted RBP16.21■□□□□ 0.18
PCDH1-203ENST00000394536 TBCDQ9BTW9 1192 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 PRDM16Q9HAZ2 1276 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 LATS2Q9NRM7 1088 aa16.21■□□□□ 0.18
PCDH1-203ENST00000394536 LBPP18428 481 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 NR6A1Q15406 480 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 MYLK3Q32MK0 819 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 CLYBLQ8N0X4 340 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 LZTR1Q8N653 840 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 FIG4Q92562 907 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 C19orf60Q96EN9 201 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 B3GALT6Q96L58 329 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 CAMKK2Q96RR4 588 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 ST3GAL5Q9UNP4 418 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 TDRKHQ9Y2W6 561 aaKnown RBP16.2■□□□□ 0.18
PCDH1-203ENST00000394536 EVPLQ92817 2033 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 H3BMM5 538 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 AURKAO14965 403 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 FOXD2O60548 495 aaPredicted RBP16.2■□□□□ 0.18
PCDH1-203ENST00000394536 RAMP2O60895 175 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 GUCA1CO95843 209 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 NR4A1P22736 598 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 DNAJB2P25686 324 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 MAGEA6P43360 314 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 BFSP2Q13515 415 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 SLC39A12Q504Y0 691 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 RAP1GAP2Q684P5 730 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 VPS33AQ96AX1 596 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.2■□□□□ 0.18
PCDH1-203ENST00000394536 DOLKQ9UPQ8 538 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 AZIN1O14977 448 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 COL6A2P12110 1019 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 EPHX2P34913 555 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 TBX4P57082 545 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 RAD51Q06609 339 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 DDR2Q16832 855 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 CXCL17Q6UXB2 119 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 CCDC81Q6ZN84 652 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 GPRIN1Q7Z2K8 1008 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 PIM3Q86V86 326 aa16.2■□□□□ 0.18
PCDH1-203ENST00000394536 GFM2Q969S9 779 aaKnown RBP16.2■□□□□ 0.18
PCDH1-203ENST00000394536 NSMCE2Q96MF7 247 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms