RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PABPC5Q96DU9 382 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 IFT43Q96FT9 208 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 TSPAN17Q96FV3 270 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SLC25A51Q9H1U9 297 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MRPL46Q9H2W6 279 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 PCDHB5Q9Y5E4 795 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 WASF2Q9Y6W5 498 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 A0A088AWK7 358 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF195O14628 629 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 EOMESO95936 686 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 IGHA2P01877 340 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 ARRB2P32121 409 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 CPOXP36551 454 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 POU4F1Q01851 419 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 TBL3Q12788 808 aaKnown RBP9.71□□□□□ -0.85
COL6A3-204ENST00000392003 HNRNPDQ14103 355 aaKnown RBP9.71□□□□□ -0.85
COL6A3-204ENST00000392003 FAM83EQ2M2I3 478 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 CTXN3Q4LDR2 81 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 ARL13AQ5H913 290 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-204ENST00000392003 TMCO4Q5TGY1 634 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 MANEALQ5VSG8 457 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 FAM171A1Q5VUB5 890 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 CD300LGQ6UXG3 332 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 LRRC8DQ7L1W4 858 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 TFAP2DQ7Z6R9 452 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 KLHDC8BQ8IXV7 354 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 SLAIN1Q8ND83 568 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 ACTRT2Q8TDY3 377 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 STYXQ8WUJ0 223 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 PPP1R36Q96LQ0 422 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF184Q99676 751 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-204ENST00000392003 PPP1R12CQ9BZL4 782 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 NDEL1Q9GZM8 345 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 NMUR1Q9HB89 426 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 KIAA1522Q9P206 1035 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-204ENST00000392003 KLF15Q9UIH9 416 aa9.71□□□□□ -0.85
COL6A3-204ENST00000392003 F8W810 466 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 TNFRSF10BO14763 440 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 CHRNGP07510 517 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SLC35E2BP0CK96 405 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 CCDC166P0CW27 439 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SELPP16109 830 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 RHOQP17081 205 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SERPINB5P36952 375 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 NDST2P52849 883 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 NRG1Q02297 640 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-204ENST00000392003 RALGPS1Q5JS13 557 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SDHAF4Q5VUM1 108 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 KIAA0408Q6ZU52 694 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 CNTN4Q8IWV2 1026 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 DBF4BQ8NFT6 615 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SEPT8Q92599 483 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 DPF3Q92784 378 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 NXNL1Q96CM4 212 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 FUBP3Q96I24 572 aaKnown RBP eCLIP9.71□□□□□ -0.86
COL6A3-204ENST00000392003 C1orf74Q96LT6 269 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 RTKNQ9BST9 563 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 FTHL17Q9BXU8 183 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 ZYG11BQ9C0D3 744 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 NCKIPSDQ9NZQ3 722 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 BCAP29Q9UHQ4 241 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SCOCQ9UIL1 159 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SCML2Q9UQR0 700 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 TLR6Q9Y2C9 796 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 SQORQ9Y6N5 450 aa9.71□□□□□ -0.86
COL6A3-204ENST00000392003 KCNU1A8MYU2 1149 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 ARVCFO00192 962 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MATN2O00339 956 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CCNT2O60583 730 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PDE5AO76074 875 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 ALDH2P05091 517 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 TFEBP19484 476 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MZF1P28698 734 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 SERPINH1P50454 418 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 EFEMP1Q12805 493 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 SPOUT1Q5T280 376 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 DENND5AQ6IQ26 1287 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 C16orf89Q6UX73 402 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PHTF2Q8N3S3 785 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 OR6P1Q8NGX9 317 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CCDC126Q96EE4 140 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 DNAJC1Q96KC8 554 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MRPL57Q9BQC6 102 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 NUF2Q9BZD4 464 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 VPS45Q9NRW7 570 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 SLC2A6Q9UGQ3 507 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CDH22Q9UJ99 828 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 AIM2O14862 343 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 ADRA1AP35348 466 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 SLC1A2P43004 574 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 TAS2R39P59534 338 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PRAMEP78395 509 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CAP1Q01518 475 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 DDR2Q16832 855 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 RANBP10Q6VN20 620 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 RNF135Q8IUD6 432 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 C2CD4AQ8NCU7 369 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PXYLP1Q8TE99 480 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PDCD6IPQ8WUM4 868 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 NRG4Q8WWG1 115 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms