RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ZNF483Q8TF39 744 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TPK1Q9H3S4 243 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 UMODL1Q5DID0 1318 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ALPPL2P10696 532 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PPP2R1BP30154 601 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SPAM1P38567 509 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF132P52740 706 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TLE2Q04725 743 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 KIFC1Q9BW19 673 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TRIT1Q9H3H1 467 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CCDC134Q9H6E4 229 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CPQQ9Y646 472 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MAST1Q9Y2H9 1570 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SSU72P8A0A1W2PR75 194 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MCIDASD6RGH6 385 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GRM6O15303 877 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 RGS14O43566 566 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MARCKSL1P49006 195 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SP140Q13342 867 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 KLF1Q13351 362 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MED22Q15528 200 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 FAM91A1Q658Y4 838 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ARMC8Q8IUR7 673 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SCUBE1Q8IWY4 988 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GPR135Q8IZ08 494 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GATSQ8NAP1 163 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SLC25A36Q96CQ1 311 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SGK2Q9HBY8 427 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NUP50Q9UKX7 468 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SMIM30A4D0T7 59 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 UPK3BL1B0FP48 263 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 UPK3BL2E5RIL1 263 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NKRFO15226 690 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 OR1F1O43749 312 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 RTN3O95197 1032 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ALOX5P09917 674 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NPR3P17342 541 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PSMA4P25789 261 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 IL17AQ16552 155 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM220Q6QAJ8 160 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TBATAQ96M53 351 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NOL6Q9H6R4 1146 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 STMN3Q9NZ72 180 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 RIMKLBQ9ULI2 386 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MTO1Q9Y2Z2 717 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 C16orf96A6NNT2 1141 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ACSM2AQ08AH3 577 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MYBPC2Q14324 1141 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ACSM2BQ68CK6 577 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CLEC6AQ6EIG7 209 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF761Q86XN6 746 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF677Q86XU0 584 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM132CQ8N3T6 1108 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PNPLA8Q9NP80 782 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 EIF2B4Q9UI10 523 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 RFXAPO00287 272 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TAS2R40P59535 323 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SMU1Q2TAY7 513 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 LIX1Q8N485 282 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR4A15Q8NGL6 344 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 IL12RB2Q99665 862 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ELAC1Q9H777 363 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 DAPK2Q9UIK4 370 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM98Q9Y2Y6 226 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TSC22D4Q9Y3Q8 395 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ARHGEF12Q9NZN5 1544 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 CARNS1A5YM72 827 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SOX30O94993 753 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PAK4O96013 591 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TSPAN19P0C672 248 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 H2AFXP16104 143 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SP2Q02086 613 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MXD1Q05195 221 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 EIF2B5Q13144 721 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OLIG2Q13516 323 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 KBTBD12Q3ZCT8 623 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 WLSQ5T9L3 541 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 IZUMO2Q6UXV1 221 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ZBTB8BQ8NAP8 495 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SIKE1Q9BRV8 207 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 EBF3Q9H4W6 596 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SF3B1O75533 1304 aaKnown RBP eCLIP7.38□□□□□ -1.234e-6■■■■■ 80.4
VPS13A-202ENST00000357409 KRT75O95678 551 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 GRIA3P42263 894 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 ID2Q02363 134 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PPP1R15BQ5SWA1 713 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SMARCD3Q6STE5 483 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 MCEMP1Q8IX19 187 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR4K2Q8NGD2 314 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 OR10Q1Q8NGQ4 319 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PRDM16Q9HAZ2 1276 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM138Q9NPI0 162 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SEPT3Q9UH03 358 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 PPP2R3BQ9Y5P8 575 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 NUDT17P0C025 328 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SLC5A3P53794 718 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 DRG2P55039 364 aaKnown RBP7.38□□□□□ -1.23
VPS13A-202ENST00000357409 SPIBQ01892 262 aa7.38□□□□□ -1.23
VPS13A-202ENST00000357409 EID3Q8N140 333 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms