RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 COQ10BQ9H8M1 238 aa12.02□□□□□ -0.49
USP1-201ENST00000339950 ZFP14Q9HCL3 533 aa12.02□□□□□ -0.49
USP1-201ENST00000339950 TMLHEQ9NVH6 421 aa12.02□□□□□ -0.49
USP1-201ENST00000339950 PTGES3LE9PB15 166 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ENPP3O14638 875 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 LHX1P48742 406 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 PGFP49763 221 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 TBCCQ15814 346 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 LINC00523Q86TU6 105 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 LGI2Q8N0V4 545 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 TXNDC5Q8NBS9 432 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 NSUN5Q96P11 429 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 DHRS4Q9BTZ2 278 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 PAIP1Q9H074 479 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 AGO3Q9H9G7 860 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 RRAGCQ9HB90 399 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 PLAC1Q9HBJ0 212 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 CROTQ9UKG9 612 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 IQCF5A8MTL0 148 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 SH3BP5O60239 455 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 RTN3O95197 1032 aaPredicted RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 F9P00740 461 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 SPATA31D3P0C874 917 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 WEE1P30291 646 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ITGA7Q13683 1181 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 CEACAM7Q14002 265 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 POLD3Q15054 466 aaPredicted RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 LRRC73Q5JTD7 316 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ARMC12Q5T9G4 340 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 PKN3Q6P5Z2 889 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 SPATA31D4Q6ZUB0 917 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 TTC9BQ8N6N2 239 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 RSPH1Q8WYR4 309 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 HMCESQ96FZ2 354 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 TRMT13Q9NUP7 481 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 CNTN3Q9P232 1028 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 EVLQ9UI08 416 aaPredicted RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 PNMA8BQ9ULN7 279 aaPredicted RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 PADI3Q9ULW8 664 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 BRCA2P51587 3418 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ASCC3Q8N3C0 2202 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 RAMP2O60895 175 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 FAM58BPP0C7Q3 252 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 SERPINH1P50454 418 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 STX5Q13190 355 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 LDLRAP1Q5SW96 308 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 C4orf22Q6V702 233 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ATG14Q6ZNE5 492 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ZC3HC1Q86WB0 502 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 HERC6Q8IVU3 1022 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 ULK4Q96C45 1275 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 PPM1MQ96MI6 270 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 NPY6RQ99463 290 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 HNRNPABQ99729 332 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 SLC38A7Q9NVC3 462 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 GMIPQ9P107 970 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 FETUBQ9UGM5 382 aa12.01□□□□□ -0.49
USP1-201ENST00000339950 RPL26L1Q9UNX3 145 aaKnown RBP12.01□□□□□ -0.49
USP1-201ENST00000339950 GLP2RO95838 553 aa12□□□□□ -0.49
USP1-201ENST00000339950 NPY2RP49146 381 aa12□□□□□ -0.49
USP1-201ENST00000339950 CPT1AP50416 773 aa12□□□□□ -0.49
USP1-201ENST00000339950 RAB27AP51159 221 aa12□□□□□ -0.49
USP1-201ENST00000339950 SH3D19Q5HYK7 790 aa12□□□□□ -0.49
USP1-201ENST00000339950 NUDT8Q8WV74 236 aa12□□□□□ -0.49
USP1-201ENST00000339950 FBXW11Q9UKB1 542 aa12□□□□□ -0.49
USP1-201ENST00000339950 SBF2Q86WG5 1849 aa12□□□□□ -0.49
USP1-201ENST00000339950 PTGESO14684 152 aa12□□□□□ -0.49
USP1-201ENST00000339950 KDM1AO60341 852 aa12□□□□□ -0.49
USP1-201ENST00000339950 FESP07332 822 aa12□□□□□ -0.49
USP1-201ENST00000339950 TSHRP16473 764 aa12□□□□□ -0.49
USP1-201ENST00000339950 ATP6V1B2P21281 511 aa12□□□□□ -0.49
USP1-201ENST00000339950 IL10P22301 178 aa12□□□□□ -0.49
USP1-201ENST00000339950 ACVRL1P37023 503 aa12□□□□□ -0.49
USP1-201ENST00000339950 CCDC81Q6ZN84 652 aa12□□□□□ -0.49
USP1-201ENST00000339950 LPCAT2Q7L5N7 544 aa12□□□□□ -0.49
USP1-201ENST00000339950 DHFR2Q86XF0 187 aa12□□□□□ -0.49
USP1-201ENST00000339950 FNDC5Q8NAU1 212 aa12□□□□□ -0.49
USP1-201ENST00000339950 FBXO30Q8TB52 745 aa12□□□□□ -0.49
USP1-201ENST00000339950 GBA3Q9H227 469 aa12□□□□□ -0.49
USP1-201ENST00000339950 EML4Q9HC35 981 aaKnown RBP12□□□□□ -0.49
USP1-201ENST00000339950 PREBQ9HCU5 417 aa12□□□□□ -0.49
USP1-201ENST00000339950 TRAF6Q9Y4K3 522 aa12□□□□□ -0.49
USP1-201ENST00000339950 COL5A3P25940 1745 aaPredicted RBP12□□□□□ -0.49
USP1-201ENST00000339950 NRAPQ86VF7 1730 aa12□□□□□ -0.49
USP1-201ENST00000339950 F8W8V4 182 aa12□□□□□ -0.49
USP1-201ENST00000339950 H3BSA7 217 aa12□□□□□ -0.49
USP1-201ENST00000339950 TMCC1O94876 653 aa12□□□□□ -0.49
USP1-201ENST00000339950 CRTAMO95727 393 aa12□□□□□ -0.49
USP1-201ENST00000339950 CHEK2O96017 543 aa12□□□□□ -0.49
USP1-201ENST00000339950 HAPLN1P10915 354 aaPredicted RBP12□□□□□ -0.49
USP1-201ENST00000339950 POU4F1Q01851 419 aa12□□□□□ -0.49
USP1-201ENST00000339950 PTPRNQ16849 979 aa12□□□□□ -0.49
USP1-201ENST00000339950 IMPG1Q17R60 797 aa12□□□□□ -0.49
USP1-201ENST00000339950 GRIN3AQ8TCU5 1115 aa12□□□□□ -0.49
USP1-201ENST00000339950 PBXIP1Q96AQ6 731 aa12□□□□□ -0.49
USP1-201ENST00000339950 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12□□□□□ -0.49
USP1-201ENST00000339950 VWA7Q9Y334 891 aa12□□□□□ -0.49
USP1-201ENST00000339950 MYO1GB0I1T2 1018 aa11.99□□□□□ -0.49
USP1-201ENST00000339950 ARSDP51689 593 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms