RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RIMKLBQ9ULI2 386 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PCDHGA10Q9Y5H3 936 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PCDHA11Q9Y5I1 949 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CHURC1-FNTBB4DL54 471 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CLPXO76031 633 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SERPINA1P01009 418 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ADORA1P30542 326 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SLC18A2Q05940 514 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 BST2Q10589 180 aaKnown RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 DDI2Q5TDH0 399 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PLET1Q6UQ28 207 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 FAM83AQ86UY5 434 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SPAG16Q8N0X2 631 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 OR8H2Q8N162 312 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CSGALNACT1Q8TDX6 532 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PGBD4Q96DM1 585 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CINPQ9BW66 212 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 GON7Q9BXV9 100 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 NFKBIZQ9BYH8 718 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 OSBPL7Q9BZF2 842 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SLC13A1Q9BZW2 595 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ERGIC3Q9Y282 383 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SNCAIPQ9Y6H5 919 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 RPS6KL1Q9Y6S9 549 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 MN1Q10571 1320 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 STX16-NPEPL1H3BU86 382 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 STX16O14662 325 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 KCNN4O15554 427 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 TLL1O43897 1013 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SCGB2A1O75556 95 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SEC24DO94855 1032 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ATG7O95352 703 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CYP17A1P05093 508 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 APRTP07741 180 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PRPS2P11908 318 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 M6PRP20645 277 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 LHX1P48742 406 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 NAA30Q147X3 362 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF549Q6P9A3 640 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PGAP1Q75T13 922 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 OTOAQ7RTW8 1153 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PHACTR4Q8IZ21 702 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 BANPQ8N9N5 519 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 BTF3L4Q96K17 158 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ZDHHC15Q96MV8 337 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 KCTD14Q9BQ13 255 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SLC2A11Q9BYW1 496 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 C6orf62Q9GZU0 229 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 DNAJC18Q9H819 358 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 TM9SF3Q9HD45 589 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 NGRNQ9NPE2 291 aaKnown RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 UPB1Q9UBR1 384 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 DOPEY2Q9Y3R5 2298 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 GCATO75600 419 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 OR6A2O95222 327 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 APOL3O95236 402 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 FADS2O95864 444 aaKnown RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ANXA8P13928 327 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 HLA-FP30511 346 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 HPCAL1P37235 193 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CCT3P49368 545 aaKnown RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 BCAMP50895 628 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 BIKQ13323 160 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 LSAMPQ13449 338 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 VPS26BQ4G0F5 336 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 NOL9Q5SY16 702 aaKnown RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 CNSTQ6PJW8 725 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 TMEM168Q9H0V1 697 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 SEMA6BQ9H3T3 888 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 MFSD1Q9H3U5 465 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 ELL3Q9HB65 397 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-201ENST00000303395 PCMTD2Q9NV79 361 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 MYH7BA7E2Y1 1941 aa5.27□□□□□ -1.57
SCN1A-201ENST00000303395 NUDT19A8MXV4 375 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 M0QYV0 167 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 RGS14O43566 566 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 BCAS2O75934 225 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-201ENST00000303395 ZCCHC18P0CG32 403 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 NR2F6P10588 404 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 HNF4AP41235 474 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 MAGEA2P43356 314 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 CLK3P49761 638 aaKnown RBP5.26□□□□□ -1.57
SCN1A-201ENST00000303395 GMPSP49915 693 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-201ENST00000303395 PITPNAQ00169 270 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 CDO1Q16878 200 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 AGMOQ6ZNB7 445 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 GALNT7Q86SF2 657 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 CLVS1Q8IUQ0 354 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-201ENST00000303395 EPHX4Q8IUS5 362 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 LENG9Q96B70 501 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 C9orf72Q96LT7 481 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 GPR101Q96P66 508 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-201ENST00000303395 PLEKHG4BQ96PX9 1271 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 NT5DC2Q9H857 520 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 IL1RAPQ9NPH3 570 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 ZFP57Q9NU63 452 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 PFDN2Q9UHV9 154 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 BARX2Q9UMQ3 279 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-201ENST00000303395 NOTOA8MTQ0 251 aa5.26□□□□□ -1.57
SCN1A-201ENST00000303395 TFECO14948 347 aaPredicted RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms