RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 LHX1P48742 406 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 QPCTQ16769 361 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 MON1BQ7L1V2 547 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SPATA13Q96N96 652 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 VPS35Q96QK1 796 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 TBC1D10AQ9BXI6 508 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 C1QTNF1Q9BXJ1 281 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CKLFQ9UBR5 152 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 M0R2N6 131 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 GJB6O95452 261 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ADAM17P78536 824 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SWI5Q1ZZU3 235 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ATP13A5Q4VNC0 1218 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 TNFAIP8L3Q5GJ75 292 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 TMC7Q7Z402 723 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 FAM131BQ86XD5 332 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 MCFD2Q8NI22 146 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ACMSDQ8TDX5 336 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 CDK5RAP1Q96SZ6 601 aaKnown RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 CCDC166P0CW27 439 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SDC2P34741 201 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 CRATP43155 626 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ARPC4P59998 168 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 PFKFB4Q16877 469 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SLC47A1Q96FL8 570 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 REXO5Q96IC2 774 aaKnown RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF670Q9BS34 389 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NFKBIZQ9BYH8 718 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 VBP1P61758 197 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 TNK2Q07912 1038 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 RNF181Q9P0P0 153 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 OR14I1A6ND48 311 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ARHGEF33A8MVX0 844 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 H3BNX3 289 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 CYB561D2O14569 222 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SERPINA6P08185 405 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SLC5A9Q2M3M2 681 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 FAM131AQ6UXB0 335 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 DSG4Q86SJ6 1040 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SQORQ9Y6N5 450 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 LACTBL1A8MY62 500 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 PRODHO43272 600 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ADSLP30566 484 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 USP46P62068 366 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NOMO3P69849 1222 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 MTAPQ13126 283 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 BIKQ13323 160 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ZCCHC23Q6ZST2 131 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 VSIG10LQ86VR7 867 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 KBTBD7Q8WVZ9 684 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 FBXO32Q969P5 355 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ELMO3Q96BJ8 720 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SIPA1Q96FS4 1042 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NDNQ99608 321 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SP140LQ9H930 580 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 PRELID1Q9Y255 219 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 DNAJB2P25686 324 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 HKDC1Q2TB90 917 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 GCNT7Q6ZNI0 430 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 FAM20CQ8IXL6 584 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SALL4Q9UJQ4 1053 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ARAP2Q8WZ64 1704 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 MYL4P12829 197 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 COX4I1P13073 169 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 UBA1P22314 1058 aaKnown RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NTSP30990 170 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 CRTC3Q6UUV7 619 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 REPS2Q8NFH8 660 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 TEX47Q8TBZ9 253 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 MAGEB10Q96LZ2 347 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 CHCHD6Q9BRQ6 235 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ST6GALNAC4Q9H4F1 302 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 C3orf18Q9UK00 162 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NUP50Q9UKX7 468 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ECM29Q5VYK3 1845 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 IGKV6D-41A0A0C4DH26 115 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 PGRMC2O15173 223 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NADKO95544 446 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SLC9A4Q6AI14 798 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 R3HCC1LQ7Z5L2 792 aaKnown RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 VAT1Q99536 393 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 BHLHE41Q9C0J9 482 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 SPATC1LQ9H0A9 340 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 PCDHB7Q9Y5E2 793 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 GPC6Q9Y625 555 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-201ENST00000295550 RPTORQ8N122 1335 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 ESPL1Q14674 2120 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 A0A096LPK6 155 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 TTC23Q5W5X9 447 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 NELL1Q92832 810 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 PTGFRNQ9P2B2 879 aa9.91□□□□□ -0.82
COL6A3-201ENST00000295550 RNASEH1O60930 286 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 VTNP04004 478 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ATP5F1P24539 256 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 MGAT1P26572 445 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 CWF19L1Q69YN2 538 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ZBTB46Q86UZ6 589 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 SCAF8Q9UPN6 1271 aaKnown RBP9.9□□□□□ -0.82
COL6A3-201ENST00000295550 DHRS12A0PJE2 317 aa9.9□□□□□ -0.82
COL6A3-201ENST00000295550 ALOX15BO15296 676 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms