RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CYBBP04839 570 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 SERPINE1P05121 402 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 CES1P23141 567 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 PDE1CQ14123 709 aaPredicted RBP16.94■□□□□ 0.3
CPSF4-201ENST00000292476 LBRQ14739 615 aaKnown RBP16.94■□□□□ 0.3
CPSF4-201ENST00000292476 DUSP6Q16828 381 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 CCDC153Q494R4 210 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 HSF5Q4G112 596 aaPredicted RBP16.94■□□□□ 0.3
CPSF4-201ENST00000292476 FASTKD1Q53R41 847 aaKnown RBP16.94■□□□□ 0.3
CPSF4-201ENST00000292476 CES4AQ5XG92 561 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 RASSF3Q86WH2 238 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 ZNF557Q8N988 423 aaPredicted RBP16.94■□□□□ 0.3
CPSF4-201ENST00000292476 ADAMTS19Q8TE59 1207 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 CERS2Q96G23 380 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 TRIM56Q9BRZ2 755 aaKnown RBP16.94■□□□□ 0.3
CPSF4-201ENST00000292476 IL22Q9GZX6 179 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 C1orf21Q9H246 121 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 CASS4Q9NQ75 786 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 SYBUQ9NX95 663 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 ZFATQ9P243 1243 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 TXNDC16Q9P2K2 825 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 EMCNQ9ULC0 261 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 HCFC2Q9Y5Z7 792 aa16.94■□□□□ 0.3
CPSF4-201ENST00000292476 CCDC195A0A1B0GUA6 201 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 F8W8V4 182 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 J3KR12 359 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 LEFTY2O00292 366 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 TPP1O14773 563 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 TBL1XO60907 577 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 TBX10O75333 385 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 HLA-DQB2P05538 268 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 RPSAP08865 295 aaKnown RBP16.93■□□□□ 0.3
CPSF4-201ENST00000292476 AOC1P19801 751 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 LTBRP36941 435 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 SESN2P58004 480 aaPredicted RBP16.93■□□□□ 0.3
CPSF4-201ENST00000292476 ZNF235Q14590 738 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 COL19A1Q14993 1142 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 N4BP2L1Q5TBK1 243 aaPredicted RBP16.93■□□□□ 0.3
CPSF4-201ENST00000292476 RINLQ6ZS11 566 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 TTC7BQ86TV6 843 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 ALYREFQ86V81 257 aaKnown RBP16.93■□□□□ 0.3
CPSF4-201ENST00000292476 EFHBQ8N7U6 833 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 KIAA1958Q8N8K9 716 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 VN1R2Q8NFZ6 395 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 PPP1R14CQ8TAE6 165 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 PIWIL2Q8TC59 973 aaKnown RBP16.93■□□□□ 0.3
CPSF4-201ENST00000292476 MYEOVQ96EZ4 313 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 POLR1EQ9GZS1 481 aaKnown RBP16.93■□□□□ 0.3
CPSF4-201ENST00000292476 PIDD1Q9HB75 910 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 TBC1D14Q9P2M4 693 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 SEPT3Q9UH03 358 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 OBSL1O75147 1896 aa16.93■□□□□ 0.3
CPSF4-201ENST00000292476 GFRA2O00451 464 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TSPAN3O60637 253 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 USP1O94782 785 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 PAPLNO95428 1278 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 GLP2RO95838 553 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 PROCP04070 461 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 FGF3P11487 239 aaPredicted RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TCF3P15923 654 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 ALOX15P16050 662 aaPredicted RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 SPRP35270 261 aaPredicted RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 SERPINB8P50452 374 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 AQP5P55064 265 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 ITKQ08881 620 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 ADAM15Q13444 863 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TAF11Q15544 211 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TSNAXIP1Q2TAA8 658 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TEDDM1Q5T9Z0 273 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 OTOP3Q7RTS5 596 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TMEM135Q86UB9 458 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TDRD5Q8NAT2 981 aaKnown RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 IMP4Q96G21 291 aaKnown RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 PRR11Q96HE9 360 aaPredicted RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 NAF1Q96HR8 494 aaKnown RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 ASB2Q96Q27 587 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 SPON2Q9BUD6 331 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 MLPHQ9BV36 600 aaPredicted RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 CCDC106Q9BWC9 280 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 FSD1LQ9BXM9 530 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 ACE2Q9BYF1 805 aaPredicted RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 MUC3BQ9H195 1237 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 ATP13A1Q9HD20 1204 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 NT5MQ9NPB1 228 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TDP1Q9NUW8 608 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 DZANK1Q9NVP4 752 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 HCFC1R1Q9NWW0 138 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 DNAJC28Q9NX36 388 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 TCF20Q9UGU0 1960 aaKnown RBP16.92■□□□□ 0.3
CPSF4-201ENST00000292476 VCANP13611 3396 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 A0A0C4DFX4 3053 aa16.92■□□□□ 0.3
CPSF4-201ENST00000292476 F5H423 210 aaPredicted RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SPECC1L-ADORA2AF8WAN1 911 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 ENTPD5O75356 428 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 H2AFYO75367 372 aaKnown RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 ACADSP16219 412 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 ATP6V1C1P21283 382 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 ACVRL1P37023 503 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 HADHAP40939 763 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 CSE1LP55060 971 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms