RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MROH6A6NGR9 719 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 DRGXA6NNA5 263 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 ATP5F1P24539 256 aaPredicted RBP20.19■□□□□ 0.82
VPS53-201ENST00000291074 CLCN5P51795 746 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 ASPHQ12797 758 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 GALNT3Q14435 633 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 LBRQ14739 615 aaKnown RBP20.19■□□□□ 0.82
VPS53-201ENST00000291074 DBF4BQ8NFT6 615 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 FATE1Q969F0 183 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 ZNF184Q99676 751 aaPredicted RBP20.19■□□□□ 0.82
VPS53-201ENST00000291074 ZNF385DQ9H6B1 395 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 STARD7Q9NQZ5 370 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 LRCH1Q9Y2L9 728 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 CRYL1Q9Y2S2 319 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 OR6C75A6NL08 312 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 LDB2O43679 373 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 TLR5O60602 858 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 NBNO60934 754 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 PPARGP37231 505 aaPredicted RBP20.18■□□□□ 0.82
VPS53-201ENST00000291074 PRAMEP78395 509 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 IL10RBQ08334 325 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 FAM83EQ2M2I3 478 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 TMEM207Q6UWW9 146 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 IZUMO2Q6UXV1 221 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 LRRC8DQ7L1W4 858 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 TAS1R1Q7RTX1 841 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 FBXW8Q8N3Y1 598 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 CNDP1Q96KN2 507 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 NCKIPSDQ9NZQ3 722 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 VTI1BQ9UEU0 232 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 ARL5AQ9Y689 179 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 A8MT66 165 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 NPHS1O60500 1241 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 FKBP6O75344 327 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 RTN3O95197 1032 aaPredicted RBP20.18■□□□□ 0.82
VPS53-201ENST00000291074 FGFR3P22607 806 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 BLOC1S5Q8TDH9 187 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 TADA1Q96BN2 335 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 RCN3Q96D15 328 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 PHF21BQ96EK2 531 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 TBATAQ96M53 351 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 CASD1Q96PB1 797 aa20.18■□□□□ 0.82
VPS53-201ENST00000291074 OLA1Q9NTK5 396 aaKnown RBP20.18■□□□□ 0.82
VPS53-201ENST00000291074 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.18■□□□□ 0.82
VPS53-201ENST00000291074 A0A0D9SEW6 157 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 LTA4HP09960 611 aaKnown RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 PFKPQ01813 784 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 GPNMBQ14956 572 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 FUT10Q6P4F1 479 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 PRSS55Q6UWB4 352 aaPredicted RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 PIWIL4Q7Z3Z4 852 aaKnown RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 CD99L2Q8TCZ2 262 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 PDCD6IPQ8WUM4 868 aaKnown RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 SRRDQ9UH36 339 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 LOC285095A0A1B0GVY8 99 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 RGSL1A5PLK6 1076 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 MOXD2PA6NHM9 499 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 ENPP3O14638 875 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 PAPSS2O95340 614 aaPredicted RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 S1PR4O95977 384 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 SLC4A1P02730 911 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 THRAP10827 490 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 TACR2P21452 398 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 KPNA2P52292 529 aaKnown RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 HK2P52789 917 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 MTTPP55157 894 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 SULT2A1Q06520 285 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 KLC1Q07866 573 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 GPR17Q13304 367 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 PARP15Q460N3 678 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 GPR158Q5T848 1215 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 LGI2Q8N0V4 545 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 DNAJC1Q96KC8 554 aaKnown RBP20.17■□□□□ 0.82
VPS53-201ENST00000291074 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.17■□□□□ 0.82
VPS53-201ENST00000291074 MFSD1Q9H3U5 465 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 VWA7Q9Y334 891 aa20.17■□□□□ 0.82
VPS53-201ENST00000291074 SLCO1B7G3V0H7 640 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 SDHDO14521 159 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 SLC7A4O43246 635 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 ALDH1A1P00352 501 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 ZNF235Q14590 738 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 ZRSR2Q15696 482 aaKnown RBP20.16■□□□□ 0.82
VPS53-201ENST00000291074 LRRC36Q1X8D7 754 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 TCTN1Q2MV58 587 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 AGAP9Q5VTM2 703 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 OR52K2Q8NGK3 314 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 PCDHB7Q9Y5E2 793 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 COPG1Q9Y678 874 aaKnown RBP20.16■□□□□ 0.82
VPS53-201ENST00000291074 CHD5Q8TDI0 1954 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 LIN7AO14910 233 aaPredicted RBP20.16■□□□□ 0.82
VPS53-201ENST00000291074 PRAMEF11O60813 436 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 ATF6P18850 670 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 SLC6A4P31645 630 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 KCNC1P48547 511 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 DNAJB13P59910 316 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 AAGABQ6PD74 315 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 DSELQ8IZU8 1212 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 CPSF7Q8N684 471 aaKnown RBP20.16■□□□□ 0.82
VPS53-201ENST00000291074 OR13C4Q8NGS5 318 aa20.16■□□□□ 0.82
VPS53-201ENST00000291074 IFT43Q96FT9 208 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms