RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 MT-ND3P03897 115 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CTHP32929 405 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 GP5P40197 560 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CSNK1DP48730 415 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 PDE1BQ01064 536 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CSTF1Q05048 431 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SLC10A7Q0GE19 358 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 ANKRD20A4Q4UJ75 823 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 HP1BP3Q5SSJ5 553 aaPredicted RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 UBAP2Q5T6F2 1119 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 GRTP1Q5TC63 336 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 KIAA0930Q6ICG6 404 aaPredicted RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CXorf57Q6NSI4 855 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 KIAA0408Q6ZU52 694 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CCDC91Q7Z6B0 441 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SPATS2Q86XZ4 545 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CNTN4Q8IWV2 1026 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CTAGE3PQ8IX95 158 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 YAF2Q8IY57 180 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SRRM1Q8IYB3 904 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CELF5Q8N6W0 485 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 MAB21L3Q8N8X9 362 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 IPMKQ8NFU5 416 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 FIBINQ8TAL6 211 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 TTC8Q8TAM2 541 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 MZB1Q8WU39 189 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 LRRN4Q8WUT4 740 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 MRGPRX2Q96LB1 330 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SLC22A12Q96S37 553 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SELENOSQ9BQE4 189 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SLC2A11Q9BYW1 496 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 NSRP1Q9H0G5 558 aaKnown RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 MUC3BQ9H195 1237 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 HPS4Q9NQG7 708 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 TDP1Q9NUW8 608 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 C2orf42Q9NWW7 574 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 CFAP97Q9P2B7 532 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 TCAF1Q9Y4C2 921 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 FRYLO94915 3013 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 SPECC1L-ADORA2AF8WAN1 911 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 LEFTY2O00292 366 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 TIMM44O43615 452 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 TBL1XO60907 577 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 FAM107AO95990 144 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 IRF1P10914 325 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 CHN1P15882 459 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 SPRP35270 261 aaPredicted RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 GRIA1P42261 906 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 SERPINH1P50454 418 aaKnown RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 VASPP50552 380 aaPredicted RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 ATP1A2P50993 1020 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 GYS2P54840 703 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 RPL26P61254 145 aaKnown RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 AP1S1P61966 158 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 IL9RQ01113 521 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 SLC18A2Q05940 514 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 SULT2A1Q06520 285 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 USP4Q13107 963 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 DENND5AQ6IQ26 1287 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 RGS9BPQ6ZS82 235 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 PRPF39Q86UA1 669 aaKnown RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 RALGPS2Q86X27 583 aaPredicted RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 PPM1NQ8N819 430 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 ARRDC2Q8TBH0 407 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 CSGALNACT1Q8TDX6 532 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 ATP2A3Q93084 1043 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 ISL2Q96A47 359 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 NUDCD1Q96RS6 583 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 FEM1AQ9BSK4 669 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 FAM167BQ9BTA0 163 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 FICDQ9BVA6 458 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 C8orf33Q9H7E9 229 aaPredicted RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 PLAC1Q9HBJ0 212 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 SMPD4Q9NXE4 827 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 MARK1Q9P0L2 795 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 TBK1Q9UHD2 729 aa13.31□□□□□ -0.28
SLIRP-201ENST00000238688 RPL26L1Q9UNX3 145 aaKnown RBP13.31□□□□□ -0.28
SLIRP-201ENST00000238688 DMXL1Q9Y485 3027 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 ZCWPW2A0A1B0GU75 182 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.3□□□□□ -0.28
SLIRP-201ENST00000238688 TYROBPO43914 113 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 ZMPSTE24O75844 475 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 NDST3O95803 873 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 CR2P20023 1033 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 ACVRL1P37023 503 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 CCNFP41002 786 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 CDK18Q07002 472 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 ITKQ08881 620 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 CCINQ13939 588 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 SPARCL1Q14515 664 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 GRM3Q14832 879 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 SLC1A5Q15758 541 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 GLIPR1L2Q4G1C9 344 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 SYCP2LQ5T4T6 812 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 RNF219Q5W0B1 726 aaPredicted RBP13.3□□□□□ -0.28
SLIRP-201ENST00000238688 TRIM68Q6AZZ1 485 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 ZC3H14Q6PJT7 736 aaKnown RBP13.3□□□□□ -0.28
SLIRP-201ENST00000238688 Q6ZS52 159 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 CAPN12Q6ZSI9 719 aa13.3□□□□□ -0.28
SLIRP-201ENST00000238688 CIR1Q86X95 450 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms