RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DDX17Q92841 729 aaKnown RBP22.14■■□□□ 1.14
CLN3-252ENST00000636907 KIF24Q5T7B8 1368 aa22.14■■□□□ 1.14
CLN3-252ENST00000636907 RGPD1P0DJD0 1748 aa22.13■■□□□ 1.13
CLN3-252ENST00000636907 E9PSI1 815 aa22.13■■□□□ 1.13
CLN3-252ENST00000636907 RNF123Q5XPI4 1314 aa22.13■■□□□ 1.13
CLN3-252ENST00000636907 ALS2Q96Q42 1657 aa22.13■■□□□ 1.13
CLN3-252ENST00000636907 SLIT3O75094 1523 aa22.12■■□□□ 1.13
CLN3-252ENST00000636907 IRX6P78412 446 aaPredicted RBP22.12■■□□□ 1.13
CLN3-252ENST00000636907 LMOD2Q6P5Q4 547 aa22.12■■□□□ 1.13
CLN3-252ENST00000636907 RCAN3Q9UKA8 241 aa22.12■■□□□ 1.13
CLN3-252ENST00000636907 LTN1O94822 1766 aa22.12■■□□□ 1.13
CLN3-252ENST00000636907 NPHP3Q7Z494 1330 aa22.11■■□□□ 1.13
CLN3-252ENST00000636907 HOXC9P31274 260 aa22.11■■□□□ 1.13
CLN3-252ENST00000636907 WDR63Q8IWG1 891 aa22.11■■□□□ 1.13
CLN3-252ENST00000636907 KCNH5Q8NCM2 988 aa22.11■■□□□ 1.13
CLN3-252ENST00000636907 PHACTR3Q96KR7 559 aa22.11■■□□□ 1.13
CLN3-252ENST00000636907 RTL1A6NKG5 1358 aa22.1■■□□□ 1.13
CLN3-252ENST00000636907 USP19O94966 1318 aa22.1■■□□□ 1.13
CLN3-252ENST00000636907 NEFMP07197 916 aa22.1■■□□□ 1.13
CLN3-252ENST00000636907 BRINP3Q76B58 766 aa22.1■■□□□ 1.13
CLN3-252ENST00000636907 RIPK4P57078 832 aa22.09■■□□□ 1.13
CLN3-252ENST00000636907 AEBP1Q8IUX7 1158 aa22.09■■□□□ 1.13
CLN3-252ENST00000636907 TRIM35Q9UPQ4 493 aa22.09■■□□□ 1.13
CLN3-252ENST00000636907 PXDNQ92626 1479 aa22.09■■□□□ 1.13
CLN3-252ENST00000636907 SULT6B1Q6IMI4 303 aa22.08■■□□□ 1.13
CLN3-252ENST00000636907 SLAIN2Q9P270 581 aa22.08■■□□□ 1.13
CLN3-252ENST00000636907 ARHGEF10O15013 1369 aa22.08■■□□□ 1.12
CLN3-252ENST00000636907 GCP02774 474 aa22.07■■□□□ 1.12
CLN3-252ENST00000636907 PLEKHG5O94827 1062 aa22.06■■□□□ 1.12
CLN3-252ENST00000636907 NFE2L2Q16236 605 aa22.06■■□□□ 1.12
CLN3-252ENST00000636907 PHRF1Q9P1Y6 1649 aaKnown RBP22.06■■□□□ 1.12
CLN3-252ENST00000636907 TNS3Q68CZ2 1445 aa22.05■■□□□ 1.12
CLN3-252ENST00000636907 IP6K1Q92551 441 aa22.05■■□□□ 1.12
CLN3-252ENST00000636907 MED1Q15648 1581 aaPredicted RBP22.05■■□□□ 1.12
CLN3-252ENST00000636907 EYA1Q99502 592 aa22.04■■□□□ 1.12
CLN3-252ENST00000636907 IGSF1Q8N6C5 1336 aa22.03■■□□□ 1.12
CLN3-252ENST00000636907 RRP1P56182 461 aaKnown RBP22.03■■□□□ 1.12
CLN3-252ENST00000636907 ZBTB7CA1YPR0 619 aa22.02■■□□□ 1.12
CLN3-252ENST00000636907 ARHGEF25Q86VW2 580 aa22.02■■□□□ 1.12
CLN3-252ENST00000636907 SPATA31A3Q5VYP0 1347 aa22.02■■□□□ 1.12
CLN3-252ENST00000636907 KDRP35968 1356 aa22.02■■□□□ 1.11
CLN3-252ENST00000636907 LTV1Q96GA3 475 aaPredicted RBP22.01■■□□□ 1.11
CLN3-252ENST00000636907 LTBP4Q8N2S1 1624 aa22■■□□□ 1.11
CLN3-252ENST00000636907 DLG5Q8TDM6 1919 aa21.99■■□□□ 1.11
CLN3-252ENST00000636907 ERICH6BQ5W0A0 696 aa21.99■■□□□ 1.11
CLN3-252ENST00000636907 MYH16Q9H6N6 1097 aa21.99■■□□□ 1.11
CLN3-252ENST00000636907 IL16Q14005 1332 aa21.99■■□□□ 1.11
CLN3-252ENST00000636907 SOS2Q07890 1332 aaPredicted RBP21.98■■□□□ 1.11
CLN3-252ENST00000636907 CRYBG1Q9Y4K1 1723 aa21.97■■□□□ 1.11
CLN3-252ENST00000636907 NHSL1Q5SYE7 1610 aa21.95■■□□□ 1.11
CLN3-252ENST00000636907 ZC3H6P61129 1189 aaKnown RBP21.95■■□□□ 1.1
CLN3-252ENST00000636907 LMOD3Q0VAK6 560 aa21.95■■□□□ 1.1
CLN3-252ENST00000636907 CABLES1Q8TDN4 633 aa21.95■■□□□ 1.1
CLN3-252ENST00000636907 FANCIQ9NVI1 1328 aa21.94■■□□□ 1.1
CLN3-252ENST00000636907 TSR2Q969E8 191 aaKnown RBP21.94■■□□□ 1.1
CLN3-252ENST00000636907 THUMPD2Q9BTF0 503 aaKnown RBP21.94■■□□□ 1.1
CLN3-252ENST00000636907 PLIN1O60240 522 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 NBPF6Q5VWK0 638 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 USHBP1Q8N6Y0 703 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 NBPF4Q96M43 638 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 AXIN2Q9Y2T1 843 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 RGPD2P0DJD1 1756 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 FAM83GA6ND36 823 aa21.91■■□□□ 1.1
CLN3-252ENST00000636907 MTHFSDQ2M296 383 aaKnown RBP21.91■■□□□ 1.1
CLN3-252ENST00000636907 CALD1Q05682 793 aaKnown RBP21.9■■□□□ 1.1
CLN3-252ENST00000636907 ANKRD24Q8TF21 1146 aa21.9■■□□□ 1.1
CLN3-252ENST00000636907 RGPD5Q99666 1765 aa21.89■■□□□ 1.1
CLN3-252ENST00000636907 LRRC59Q96AG4 307 aaKnown RBP21.89■■□□□ 1.1
CLN3-252ENST00000636907 DCTN1Q14203 1278 aa21.88■■□□□ 1.09
CLN3-252ENST00000636907 COL18A1P39060 1754 aa21.88■■□□□ 1.09
CLN3-252ENST00000636907 BCAR3O75815 825 aa21.88■■□□□ 1.09
CLN3-252ENST00000636907 EXOSC9Q06265 439 aaKnown RBP21.88■■□□□ 1.09
CLN3-252ENST00000636907 PPP4R2Q9NY27 417 aa21.88■■□□□ 1.09
CLN3-252ENST00000636907 GAS2L2Q8NHY3 880 aa21.87■■□□□ 1.09
CLN3-252ENST00000636907 IFT57Q9NWB7 429 aa21.87■■□□□ 1.09
CLN3-252ENST00000636907 LAS1LQ9Y4W2 734 aaKnown RBP21.87■■□□□ 1.09
CLN3-252ENST00000636907 ROBO1Q9Y6N7 1651 aa21.87■■□□□ 1.09
CLN3-252ENST00000636907 NCAPD2Q15021 1401 aa21.86■■□□□ 1.09
CLN3-252ENST00000636907 CAMTA1Q9Y6Y1 1673 aa21.86■■□□□ 1.09
CLN3-252ENST00000636907 ABCC6O95255 1503 aa21.85■■□□□ 1.09
CLN3-252ENST00000636907 ZNF853P0CG23 659 aa21.85■■□□□ 1.09
CLN3-252ENST00000636907 RARSP54136 660 aaKnown RBP21.85■■□□□ 1.09
CLN3-252ENST00000636907 GNAI1P63096 354 aa21.85■■□□□ 1.09
CLN3-252ENST00000636907 CPDO75976 1380 aa21.85■■□□□ 1.09
CLN3-252ENST00000636907 KIAA0232Q92628 1395 aa21.85■■□□□ 1.09
CLN3-252ENST00000636907 ERBB3P21860 1342 aa21.85■■□□□ 1.09
CLN3-252ENST00000636907 CT47B1P0C2W7 299 aaPredicted RBP21.85■■□□□ 1.09
CLN3-252ENST00000636907 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.85■■□□□ 1.09
CLN3-252ENST00000636907 MCM10Q7L590 875 aa21.84■■□□□ 1.09
CLN3-252ENST00000636907 ABCA3Q99758 1704 aa21.84■■□□□ 1.09
CLN3-252ENST00000636907 CHRNA2Q15822 529 aa21.83■■□□□ 1.09
CLN3-252ENST00000636907 CFAP44Q96MT7 982 aa21.83■■□□□ 1.09
CLN3-252ENST00000636907 C20orf194Q5TEA3 1177 aa21.82■■□□□ 1.08
CLN3-252ENST00000636907 EXOC6Q8TAG9 804 aa21.82■■□□□ 1.08
CLN3-252ENST00000636907 LMO7Q8WWI1 1683 aa21.82■■□□□ 1.08
CLN3-252ENST00000636907 MBIPQ9NS73 344 aa21.82■■□□□ 1.08
CLN3-252ENST00000636907 AHDC1Q5TGY3 1603 aaPredicted RBP21.81■■□□□ 1.08
CLN3-252ENST00000636907 CRB1P82279 1406 aa21.8■■□□□ 1.08
CLN3-252ENST00000636907 RTF1Q92541 710 aaKnown RBP21.8■■□□□ 1.08
CLN3-252ENST00000636907 HTATSF1O43719 755 aaKnown RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms