RNA–Protein interactions for RNA: ENST00000635988.1

CACNA1A-220, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-220ENST00000635988 PDCL3Q9H2J4 239 aa18.33■□□□□ 0.52
CACNA1A-220ENST00000635988 CDC42BPGQ6DT37 1551 aa18.33■□□□□ 0.52
CACNA1A-220ENST00000635988 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.32■□□□□ 0.52
CACNA1A-220ENST00000635988 OFD1O75665 1012 aa18.32■□□□□ 0.52
CACNA1A-220ENST00000635988 MRPL50Q8N5N7 158 aaKnown RBP18.32■□□□□ 0.52
CACNA1A-220ENST00000635988 KIAA1211Q6ZU35 1233 aa18.31■□□□□ 0.52
CACNA1A-220ENST00000635988 HECW2Q9P2P5 1572 aa18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 RBM42Q9BTD8 480 aaKnown RBP18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 VAMP4O75379 141 aa18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 ZMYND15Q9H091 742 aa18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 CWC22Q9HCG8 908 aaKnown RBP18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 ABCC4O15439 1325 aa18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 NEXMIFQ5QGS0 1516 aa18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 CAMSAP1Q5T5Y3 1602 aa18.3■□□□□ 0.52
CACNA1A-220ENST00000635988 FAM135BQ49AJ0 1406 aa18.29■□□□□ 0.52
CACNA1A-220ENST00000635988 GNAI1P63096 354 aa18.29■□□□□ 0.52
CACNA1A-220ENST00000635988 HDGFL2Q7Z4V5 671 aaPredicted RBP18.29■□□□□ 0.52
CACNA1A-220ENST00000635988 KIF24Q5T7B8 1368 aa18.29■□□□□ 0.52
CACNA1A-220ENST00000635988 PIK3C2BO00750 1634 aa18.29■□□□□ 0.52
CACNA1A-220ENST00000635988 SIRT2Q8IXJ6 389 aa18.28■□□□□ 0.52
CACNA1A-220ENST00000635988 API5Q9BZZ5 524 aaKnown RBP18.28■□□□□ 0.52
CACNA1A-220ENST00000635988 LRRC7Q96NW7 1537 aa18.28■□□□□ 0.52
CACNA1A-220ENST00000635988 GGT6Q6P531 493 aa18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 IFT57Q9NWB7 429 aa18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 ABCC3O15438 1527 aa18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 CYP2E1P05181 493 aaPredicted RBP18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 PRKAR2BP31323 418 aa18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 NFE2L2Q16236 605 aa18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 C1orf115Q9H7X2 142 aa18.27■□□□□ 0.52
CACNA1A-220ENST00000635988 SAFB2Q14151 953 aaKnown RBP eCLIP18.26■□□□□ 0.51
CACNA1A-220ENST00000635988 MCTP1Q6DN14 999 aa18.26■□□□□ 0.51
CACNA1A-220ENST00000635988 CD163L1Q9NR16 1453 aa18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 MLH3Q9UHC1 1453 aa18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 CLTCQ00610 1675 aaKnown RBP18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 ZSCAN23Q3MJ62 389 aa18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 INTS3Q68E01 1043 aaKnown RBP18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 PLEKHM2Q8IWE5 1019 aa18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 LMBRD1Q9NUN5 540 aa18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 CFAP65Q6ZU64 1925 aaKnown RBP18.25■□□□□ 0.51
CACNA1A-220ENST00000635988 FRMPD1Q5SYB0 1578 aa18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 ASXL2Q76L83 1435 aa18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 GSPT1P15170 499 aaKnown RBP18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 TTC22Q5TAA0 569 aa18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 CASC1Q6TDU7 716 aa18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 DCTPP1Q9H773 170 aa18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 NOL7Q9UMY1 257 aaKnown RBP18.24■□□□□ 0.51
CACNA1A-220ENST00000635988 ST18O60284 1047 aa18.23■□□□□ 0.51
CACNA1A-220ENST00000635988 CAVIN1Q6NZI2 390 aaKnown RBP18.23■□□□□ 0.51
CACNA1A-220ENST00000635988 PDLIM2Q96JY6 352 aa18.23■□□□□ 0.51
CACNA1A-220ENST00000635988 MAP7D2Q96T17 732 aa18.23■□□□□ 0.51
CACNA1A-220ENST00000635988 USP26Q9BXU7 913 aa18.23■□□□□ 0.51
CACNA1A-220ENST00000635988 ZNF500O60304 480 aaPredicted RBP18.23■□□□□ 0.51
CACNA1A-220ENST00000635988 NCLP19338 710 aaKnown RBP18.22■□□□□ 0.51
CACNA1A-220ENST00000635988 LMOD3Q0VAK6 560 aa18.22■□□□□ 0.51
CACNA1A-220ENST00000635988 PTPRMP28827 1452 aa18.22■□□□□ 0.51
CACNA1A-220ENST00000635988 ZNF853P0CG23 659 aa18.22■□□□□ 0.51
CACNA1A-220ENST00000635988 NUTM2DQ5VT03 806 aaPredicted RBP18.22■□□□□ 0.51
CACNA1A-220ENST00000635988 MCM5P33992 734 aa18.21■□□□□ 0.51
CACNA1A-220ENST00000635988 STK26Q9P289 416 aa18.21■□□□□ 0.51
CACNA1A-220ENST00000635988 POGZQ7Z3K3 1410 aa18.21■□□□□ 0.51
CACNA1A-220ENST00000635988 TWISTNBQ3B726 338 aaPredicted RBP18.21■□□□□ 0.51
CACNA1A-220ENST00000635988 TSPYL6Q8N831 410 aa18.21■□□□□ 0.51
CACNA1A-220ENST00000635988 YEATS2Q9ULM3 1422 aa18.21■□□□□ 0.51
CACNA1A-220ENST00000635988 KIF20BQ96Q89 1820 aa18.2■□□□□ 0.5
CACNA1A-220ENST00000635988 CSPP1Q1MSJ5 1256 aa18.19■□□□□ 0.5
CACNA1A-220ENST00000635988 MBIPQ9NS73 344 aa18.19■□□□□ 0.5
CACNA1A-220ENST00000635988 MINK1Q8N4C8 1332 aaPredicted RBP18.19■□□□□ 0.5
CACNA1A-220ENST00000635988 RBSNQ9H1K0 784 aa18.19■□□□□ 0.5
CACNA1A-220ENST00000635988 REC8O95072 547 aa18.18■□□□□ 0.5
CACNA1A-220ENST00000635988 PRAM1Q96QH2 718 aa18.18■□□□□ 0.5
CACNA1A-220ENST00000635988 SLC52A1Q9NWF4 448 aa18.18■□□□□ 0.5
CACNA1A-220ENST00000635988 POLKQ9UBT6 870 aa18.18■□□□□ 0.5
CACNA1A-220ENST00000635988 HAP1P54257 671 aaPredicted RBP18.18■□□□□ 0.5
CACNA1A-220ENST00000635988 RPAP2Q8IXW5 612 aaPredicted RBP18.18■□□□□ 0.5
CACNA1A-220ENST00000635988 PHACTR3Q96KR7 559 aa18.17■□□□□ 0.5
CACNA1A-220ENST00000635988 SIGLEC1Q9BZZ2 1709 aa18.17■□□□□ 0.5
CACNA1A-220ENST00000635988 ANKRD44Q8N8A2 993 aa18.17■□□□□ 0.5
CACNA1A-220ENST00000635988 YTHDC2Q9H6S0 1430 aaKnown RBP18.17■□□□□ 0.5
CACNA1A-220ENST00000635988 PRIM1P49642 420 aaKnown RBP18.16■□□□□ 0.5
CACNA1A-220ENST00000635988 PRPF40AO75400 957 aaKnown RBP18.16■□□□□ 0.5
CACNA1A-220ENST00000635988 LRSAM1Q6UWE0 723 aa18.16■□□□□ 0.5
CACNA1A-220ENST00000635988 THUMPD2Q9BTF0 503 aaKnown RBP18.16■□□□□ 0.5
CACNA1A-220ENST00000635988 ZKSCAN5Q9Y2L8 839 aa18.16■□□□□ 0.5
CACNA1A-220ENST00000635988 ELL2O00472 640 aaPredicted RBP18.15■□□□□ 0.5
CACNA1A-220ENST00000635988 MBD3O95983 291 aa18.15■□□□□ 0.5
CACNA1A-220ENST00000635988 MTERF4Q7Z6M4 381 aaKnown RBP18.15■□□□□ 0.5
CACNA1A-220ENST00000635988 CDK19Q9BWU1 502 aa18.15■□□□□ 0.5
CACNA1A-220ENST00000635988 CCDC39Q9UFE4 941 aa18.15■□□□□ 0.5
CACNA1A-220ENST00000635988 CABP1Q9NZU7 370 aa18.15■□□□□ 0.5
CACNA1A-220ENST00000635988 HMOX1P09601 288 aa18.14■□□□□ 0.49
CACNA1A-220ENST00000635988 IDI1Q13907 227 aa18.14■□□□□ 0.49
CACNA1A-220ENST00000635988 R3HCC1Q9Y3T6 440 aaKnown RBP18.14■□□□□ 0.49
CACNA1A-220ENST00000635988 ARHGEF40Q8TER5 1519 aa18.14■□□□□ 0.49
CACNA1A-220ENST00000635988 ATP7BP35670 1465 aa18.14■□□□□ 0.49
CACNA1A-220ENST00000635988 SDSP20132 328 aa18.13■□□□□ 0.49
CACNA1A-220ENST00000635988 C8orf58Q8NAV2 365 aa18.13■□□□□ 0.49
CACNA1A-220ENST00000635988 GPT2Q8TD30 523 aa18.13■□□□□ 0.49
CACNA1A-220ENST00000635988 PKP1Q13835 747 aa18.13■□□□□ 0.49
CACNA1A-220ENST00000635988 AK9Q5TCS8 1911 aa18.13■□□□□ 0.49
CACNA1A-220ENST00000635988 MCM2P49736 904 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms