RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 LRPPRCP42704 1394 aaKnown RBP13.42□□□□□ -0.26
FAM3A-221ENST00000612856 TRPM2O94759 1503 aa13.42□□□□□ -0.26
FAM3A-221ENST00000612856 ATAD2Q6PL18 1390 aa13.41□□□□□ -0.26
FAM3A-221ENST00000612856 LMTK3Q96Q04 1460 aa13.41□□□□□ -0.26
FAM3A-221ENST00000612856 FYB1O15117 783 aa13.41□□□□□ -0.26
FAM3A-221ENST00000612856 MFAP1P55081 439 aaKnown RBP13.4□□□□□ -0.26
FAM3A-221ENST00000612856 GNAI1P63096 354 aa13.4□□□□□ -0.26
FAM3A-221ENST00000612856 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
FAM3A-221ENST00000612856 ABCA9Q8IUA7 1624 aa13.4□□□□□ -0.26
FAM3A-221ENST00000612856 EIF2AK4Q9P2K8 1649 aaKnown RBP13.4□□□□□ -0.26
FAM3A-221ENST00000612856 MSNP26038 577 aaKnown RBP13.4□□□□□ -0.26
FAM3A-221ENST00000612856 FOXD4L1Q9NU39 408 aa13.4□□□□□ -0.26
FAM3A-221ENST00000612856 TWISTNBQ3B726 338 aaPredicted RBP13.4□□□□□ -0.26
FAM3A-221ENST00000612856 CASC1Q6TDU7 716 aa13.4□□□□□ -0.26
FAM3A-221ENST00000612856 RWDD1Q9H446 243 aaPredicted RBP13.4□□□□□ -0.26
FAM3A-221ENST00000612856 SF3B2Q13435 895 aaKnown RBP13.39□□□□□ -0.27
FAM3A-221ENST00000612856 MSH6P52701 1360 aa13.39□□□□□ -0.27
FAM3A-221ENST00000612856 DUSP27Q5VZP5 1158 aa13.39□□□□□ -0.27
FAM3A-221ENST00000612856 DNTTIP2Q5QJE6 756 aaKnown RBP13.39□□□□□ -0.27
FAM3A-221ENST00000612856 JARID2Q92833 1246 aaPredicted RBP13.39□□□□□ -0.27
FAM3A-221ENST00000612856 GAS2L2Q8NHY3 880 aa13.39□□□□□ -0.27
FAM3A-221ENST00000612856 LNPKQ9C0E8 428 aa13.39□□□□□ -0.27
FAM3A-221ENST00000612856 NEUROD6Q96NK8 337 aa13.38□□□□□ -0.27
FAM3A-221ENST00000612856 SLC39A6Q13433 755 aa13.38□□□□□ -0.27
FAM3A-221ENST00000612856 DZIP1LQ8IYY4 767 aaKnown RBP13.38□□□□□ -0.27
FAM3A-221ENST00000612856 SIL1Q9H173 461 aa13.38□□□□□ -0.27
FAM3A-221ENST00000612856 CHMP4BQ9H444 224 aaKnown RBP13.38□□□□□ -0.27
FAM3A-221ENST00000612856 ZNF219Q9P2Y4 722 aaPredicted RBP13.38□□□□□ -0.27
FAM3A-221ENST00000612856 CENPQQ7L2Z9 268 aaPredicted RBP13.37□□□□□ -0.27
FAM3A-221ENST00000612856 WWC1Q8IX03 1113 aa13.37□□□□□ -0.27
FAM3A-221ENST00000612856 CEP152O94986 1710 aa13.37□□□□□ -0.27
FAM3A-221ENST00000612856 BTBD11A6QL63 1104 aa13.37□□□□□ -0.27
FAM3A-221ENST00000612856 FAM182BQ5T319 152 aa13.37□□□□□ -0.27
FAM3A-221ENST00000612856 SAMD1Q6SPF0 538 aaPredicted RBP13.37□□□□□ -0.27
FAM3A-221ENST00000612856 ANKRD24Q8TF21 1146 aa13.37□□□□□ -0.27
FAM3A-221ENST00000612856 KIDINS220Q9ULH0 1771 aa13.36□□□□□ -0.27
FAM3A-221ENST00000612856 ASXL1Q8IXJ9 1541 aa13.36□□□□□ -0.27
FAM3A-221ENST00000612856 RAD21O60216 631 aa13.36□□□□□ -0.27
FAM3A-221ENST00000612856 SLFN5Q08AF3 891 aa13.36□□□□□ -0.27
FAM3A-221ENST00000612856 ERVK-7P63135 1459 aa13.36□□□□□ -0.27
FAM3A-221ENST00000612856 SPHKAPQ2M3C7 1700 aa13.36□□□□□ -0.27
FAM3A-221ENST00000612856 TMPOP42166 694 aaKnown RBP13.35□□□□□ -0.27
FAM3A-221ENST00000612856 KCNH5Q8NCM2 988 aa13.35□□□□□ -0.27
FAM3A-221ENST00000612856 TNNQ9UQP3 1299 aa13.35□□□□□ -0.27
FAM3A-221ENST00000612856 TTC21BQ7Z4L5 1316 aa13.35□□□□□ -0.27
FAM3A-221ENST00000612856 ZNF335Q9H4Z2 1342 aaPredicted RBP13.35□□□□□ -0.27
FAM3A-221ENST00000612856 TET3O43151 1660 aa13.35□□□□□ -0.27
FAM3A-221ENST00000612856 MLH3Q9UHC1 1453 aa13.35□□□□□ -0.27
FAM3A-221ENST00000612856 ESPNB1AK53 854 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 EFCAB6Q5THR3 1501 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 F6X3S4 739 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 HMMRO75330 724 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 PHF14O94880 888 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 XRCC6P12956 609 aaKnown RBP eCLIP13.34□□□□□ -0.27
FAM3A-221ENST00000612856 SPG7Q9UQ90 795 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 EXOC5O00471 708 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 GCP02774 474 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 CHMP4CQ96CF2 233 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 PRDM10Q9NQV6 1147 aa13.34□□□□□ -0.27
FAM3A-221ENST00000612856 INO80Q9ULG1 1556 aaPredicted RBP13.34□□□□□ -0.27
FAM3A-221ENST00000612856 MADDQ8WXG6 1647 aa13.33□□□□□ -0.28
FAM3A-221ENST00000612856 DDX58O95786 925 aaKnown RBP13.33□□□□□ -0.28
FAM3A-221ENST00000612856 KIAA1211Q6ZU35 1233 aa13.33□□□□□ -0.28
FAM3A-221ENST00000612856 PPRC1Q5VV67 1664 aaKnown RBP13.33□□□□□ -0.28
FAM3A-221ENST00000612856 BTG4Q9NY30 223 aa13.33□□□□□ -0.28
FAM3A-221ENST00000612856 SLAIN2Q9P270 581 aa13.33□□□□□ -0.28
FAM3A-221ENST00000612856 HECW2Q9P2P5 1572 aa13.33□□□□□ -0.28
FAM3A-221ENST00000612856 ARAP3Q8WWN8 1544 aa13.33□□□□□ -0.28
FAM3A-221ENST00000612856 GPTP24298 496 aa13.32□□□□□ -0.28
FAM3A-221ENST00000612856 VPS37DQ86XT2 251 aa13.32□□□□□ -0.28
FAM3A-221ENST00000612856 NOB1Q9ULX3 412 aaKnown RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 TRAK2O60296 914 aa13.32□□□□□ -0.28
FAM3A-221ENST00000612856 KRT24Q2M2I5 525 aa13.32□□□□□ -0.28
FAM3A-221ENST00000612856 FOXD4L6Q3SYB3 417 aaPredicted RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 FOXD4L3Q6VB84 417 aaPredicted RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 R3HCC1Q9Y3T6 440 aaKnown RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 FOXD4L5Q5VV16 416 aaPredicted RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 FOXD4L4Q8WXT5 416 aaPredicted RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 TBX22Q9Y458 520 aa13.32□□□□□ -0.28
FAM3A-221ENST00000612856 RNF17Q9BXT8 1623 aaKnown RBP13.32□□□□□ -0.28
FAM3A-221ENST00000612856 NPHP3Q7Z494 1330 aa13.32□□□□□ -0.28
FAM3A-221ENST00000612856 ABCC3O15438 1527 aa13.31□□□□□ -0.28
FAM3A-221ENST00000612856 NEO1Q92859 1461 aa13.31□□□□□ -0.28
FAM3A-221ENST00000612856 A0A1W2PP64 1363 aa13.31□□□□□ -0.28
FAM3A-221ENST00000612856 PTMAP06454 111 aaKnown RBP13.31□□□□□ -0.28
FAM3A-221ENST00000612856 ZHX1Q9UKY1 873 aaPredicted RBP13.31□□□□□ -0.28
FAM3A-221ENST00000612856 ZBTB3Q9H5J0 574 aa13.3□□□□□ -0.28
FAM3A-221ENST00000612856 HSP90AB1P08238 724 aaKnown RBP13.3□□□□□ -0.28
FAM3A-221ENST00000612856 KIF1BO60333 1816 aa13.3□□□□□ -0.28
FAM3A-221ENST00000612856 SURF6O75683 361 aaKnown RBP13.3□□□□□ -0.28
FAM3A-221ENST00000612856 STK11IPQ8N1F8 1099 aa13.3□□□□□ -0.28
FAM3A-221ENST00000612856 TMOD3Q9NYL9 352 aa13.3□□□□□ -0.28
FAM3A-221ENST00000612856 GNAT3A8MTJ3 354 aa13.3□□□□□ -0.28
FAM3A-221ENST00000612856 MTMR7Q9Y216 660 aa13.3□□□□□ -0.28
FAM3A-221ENST00000612856 UBTFL1P0CB47 393 aaPredicted RBP13.29□□□□□ -0.28
FAM3A-221ENST00000612856 HSCBQ8IWL3 235 aa13.29□□□□□ -0.28
FAM3A-221ENST00000612856 CHMP4AQ9BY43 222 aa13.29□□□□□ -0.28
FAM3A-221ENST00000612856 POLKQ9UBT6 870 aa13.29□□□□□ -0.28
FAM3A-221ENST00000612856 FCHSD2O94868 740 aa13.28□□□□□ -0.28
FAM3A-221ENST00000612856 PIK3C2GO75747 1445 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms