RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 ZNF692Q9BU19 519 aaPredicted RBP17.48■□□□□ 0.39
COL6A1-207ENST00000612273 TSHZ3Q63HK5 1081 aa17.48■□□□□ 0.39
COL6A1-207ENST00000612273 NOL8Q76FK4 1167 aaKnown RBP17.48■□□□□ 0.39
COL6A1-207ENST00000612273 KIF2CQ99661 725 aa17.48■□□□□ 0.39
COL6A1-207ENST00000612273 GRPEL1Q9HAV7 217 aa17.48■□□□□ 0.39
COL6A1-207ENST00000612273 IFT172Q9UG01 1749 aa17.47■□□□□ 0.39
COL6A1-207ENST00000612273 PPLO60437 1756 aa17.47■□□□□ 0.39
COL6A1-207ENST00000612273 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
COL6A1-207ENST00000612273 DDX11L8A8MPP1 907 aa17.46■□□□□ 0.39
COL6A1-207ENST00000612273 GSPT1P15170 499 aaKnown RBP17.46■□□□□ 0.39
COL6A1-207ENST00000612273 RBM25P49756 843 aaKnown RBP17.46■□□□□ 0.39
COL6A1-207ENST00000612273 LMTK2Q8IWU2 1503 aa17.46■□□□□ 0.39
COL6A1-207ENST00000612273 IL13P35225 146 aa17.46■□□□□ 0.39
COL6A1-207ENST00000612273 F6X3S4 739 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 GCC1Q96CN9 775 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 NUDT16Q96DE0 195 aaKnown RBP17.45■□□□□ 0.38
COL6A1-207ENST00000612273 MLH3Q9UHC1 1453 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 GBP4Q96PP9 640 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 NEXMIFQ5QGS0 1516 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 CD163L1Q9NR16 1453 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 K7ELQ4 463 aaPredicted RBP17.45■□□□□ 0.38
COL6A1-207ENST00000612273 FAM69CQ0P6D2 419 aa17.45■□□□□ 0.38
COL6A1-207ENST00000612273 FOXD4L6Q3SYB3 417 aaPredicted RBP17.45■□□□□ 0.38
COL6A1-207ENST00000612273 FOXD4L3Q6VB84 417 aaPredicted RBP17.45■□□□□ 0.38
COL6A1-207ENST00000612273 FSD2A1L4K1 749 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 PKP1Q13835 747 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 TRIM44Q96DX7 344 aaPredicted RBP17.43■□□□□ 0.38
COL6A1-207ENST00000612273 IFT57Q9NWB7 429 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 DDX49Q9Y6V7 483 aaKnown RBP17.43■□□□□ 0.38
COL6A1-207ENST00000612273 COL3A1P02461 1466 aaPredicted RBP17.43■□□□□ 0.38
COL6A1-207ENST00000612273 FOXO3O43524 673 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 CDC45O75419 566 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 MRE11P49959 708 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 CFAP44Q96MT7 982 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 MEIS3Q99687 375 aa17.43■□□□□ 0.38
COL6A1-207ENST00000612273 SIGLEC1Q9BZZ2 1709 aa17.42■□□□□ 0.38
COL6A1-207ENST00000612273 CALD1Q05682 793 aaKnown RBP17.42■□□□□ 0.38
COL6A1-207ENST00000612273 MCTP1Q6DN14 999 aa17.42■□□□□ 0.38
COL6A1-207ENST00000612273 PTPRMP28827 1452 aa17.42■□□□□ 0.38
COL6A1-207ENST00000612273 WASLO00401 505 aaPredicted RBP17.42■□□□□ 0.38
COL6A1-207ENST00000612273 HSP90AB2PQ58FF8 381 aa17.42■□□□□ 0.38
COL6A1-207ENST00000612273 PLEKHM2Q8IWE5 1019 aa17.42■□□□□ 0.38
COL6A1-207ENST00000612273 ESF1Q9H501 851 aaKnown RBP17.41■□□□□ 0.38
COL6A1-207ENST00000612273 LRRC7Q96NW7 1537 aa17.41■□□□□ 0.38
COL6A1-207ENST00000612273 API5Q9BZZ5 524 aaKnown RBP17.41■□□□□ 0.38
COL6A1-207ENST00000612273 SLC4A2P04920 1241 aa17.41■□□□□ 0.38
COL6A1-207ENST00000612273 ARHGEF28Q8N1W1 1705 aaKnown RBP17.41■□□□□ 0.38
COL6A1-207ENST00000612273 NEURL4Q96JN8 1562 aa17.4■□□□□ 0.38
COL6A1-207ENST00000612273 HECW2Q9P2P5 1572 aa17.4■□□□□ 0.38
COL6A1-207ENST00000612273 PNPLA6Q8IY17 1366 aa17.4■□□□□ 0.38
COL6A1-207ENST00000612273 VIRMAQ69YN4 1812 aaKnown RBP17.4■□□□□ 0.38
COL6A1-207ENST00000612273 ZC3H13Q5T200 1668 aaKnown RBP17.4■□□□□ 0.38
COL6A1-207ENST00000612273 NUTM2GQ5VZR2 741 aa17.39■□□□□ 0.37
COL6A1-207ENST00000612273 ADGRB2O60241 1585 aa17.39■□□□□ 0.37
COL6A1-207ENST00000612273 ZBTB7CA1YPR0 619 aa17.39■□□□□ 0.37
COL6A1-207ENST00000612273 RAB3GAP1Q15042 981 aa17.39■□□□□ 0.37
COL6A1-207ENST00000612273 SNX21Q969T3 373 aa17.39■□□□□ 0.37
COL6A1-207ENST00000612273 ZGPATQ8N5A5 531 aaKnown RBP17.38■□□□□ 0.37
COL6A1-207ENST00000612273 NCBP3Q53F19 620 aaKnown RBP17.38■□□□□ 0.37
COL6A1-207ENST00000612273 EXOC6BQ9Y2D4 811 aa17.38■□□□□ 0.37
COL6A1-207ENST00000612273 CCDC61Q9Y6R9 512 aa17.38■□□□□ 0.37
COL6A1-207ENST00000612273 ZMYM3Q14202 1370 aa17.38■□□□□ 0.37
COL6A1-207ENST00000612273 FAM135BQ49AJ0 1406 aa17.37■□□□□ 0.37
COL6A1-207ENST00000612273 ERBB4Q15303 1308 aa17.37■□□□□ 0.37
COL6A1-207ENST00000612273 SDSP20132 328 aa17.37■□□□□ 0.37
COL6A1-207ENST00000612273 EIF4A2Q14240 407 aaKnown RBP17.37■□□□□ 0.37
COL6A1-207ENST00000612273 G2E3Q7L622 706 aa17.37■□□□□ 0.37
COL6A1-207ENST00000612273 ABCC4O15439 1325 aa17.37■□□□□ 0.37
COL6A1-207ENST00000612273 GOLGA6L22H0YM25 854 aa17.37■□□□□ 0.37
COL6A1-207ENST00000612273 CAVIN1Q6NZI2 390 aaKnown RBP17.37■□□□□ 0.37
COL6A1-207ENST00000612273 CHMP4BQ9H444 224 aaKnown RBP17.37■□□□□ 0.37
COL6A1-207ENST00000612273 PIK3C2BO00750 1634 aa17.36■□□□□ 0.37
COL6A1-207ENST00000612273 ZNF853P0CG23 659 aa17.36■□□□□ 0.37
COL6A1-207ENST00000612273 LTV1Q96GA3 475 aaPredicted RBP17.36■□□□□ 0.37
COL6A1-207ENST00000612273 LMOD3Q0VAK6 560 aa17.36■□□□□ 0.37
COL6A1-207ENST00000612273 ARHGAP45Q92619 1136 aa17.36■□□□□ 0.37
COL6A1-207ENST00000612273 METP08581 1390 aa17.35■□□□□ 0.37
COL6A1-207ENST00000612273 DTNBO60941 627 aa17.35■□□□□ 0.37
COL6A1-207ENST00000612273 SLC26A8Q96RN1 970 aa17.35■□□□□ 0.37
COL6A1-207ENST00000612273 DDIT3P35638 169 aa17.35■□□□□ 0.37
COL6A1-207ENST00000612273 TTC22Q5TAA0 569 aa17.35■□□□□ 0.37
COL6A1-207ENST00000612273 ZNF428Q96B54 188 aa17.34■□□□□ 0.37
COL6A1-207ENST00000612273 ESPNB1AK53 854 aa17.34■□□□□ 0.37
COL6A1-207ENST00000612273 BAG4O95429 457 aaKnown RBP17.34■□□□□ 0.37
COL6A1-207ENST00000612273 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL6A1-207ENST00000612273 DCTPP1Q9H773 170 aa17.34■□□□□ 0.37
COL6A1-207ENST00000612273 CEP85Q6P2H3 762 aa17.33■□□□□ 0.37
COL6A1-207ENST00000612273 RBM27Q9P2N5 1060 aaKnown RBP17.33■□□□□ 0.37
COL6A1-207ENST00000612273 PRPF40AO75400 957 aaKnown RBP17.33■□□□□ 0.36
COL6A1-207ENST00000612273 RILPL2Q969X0 211 aa17.33■□□□□ 0.36
COL6A1-207ENST00000612273 ARHGEF40Q8TER5 1519 aa17.33■□□□□ 0.36
COL6A1-207ENST00000612273 TSPYL4Q9UJ04 414 aa17.32■□□□□ 0.36
COL6A1-207ENST00000612273 RIMS2Q9UQ26 1411 aa17.32■□□□□ 0.36
COL6A1-207ENST00000612273 MSH6P52701 1360 aa17.32■□□□□ 0.36
COL6A1-207ENST00000612273 TRIM6-TRIM34B2RNG4 842 aa17.32■□□□□ 0.36
COL6A1-207ENST00000612273 MYO5BQ9ULV0 1848 aa17.31■□□□□ 0.36
COL6A1-207ENST00000612273 INTS3Q68E01 1043 aaKnown RBP17.31■□□□□ 0.36
COL6A1-207ENST00000612273 C14orf37Q86TY3 774 aa17.31■□□□□ 0.36
COL6A1-207ENST00000612273 USP26Q9BXU7 913 aa17.31■□□□□ 0.36
COL6A1-207ENST00000612273 ZFYVE9O95405 1425 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms