RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 CFTRP13569 1480 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 C21orf2O43822 256 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 KDM4AO75164 1064 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 CCT2P78371 535 aaKnown RBP10.67□□□□□ -0.7
COMMD3-215ENST00000602574 PDE3BQ13370 1112 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 DRC1Q96MC2 740 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 ZNF446Q9NWS9 450 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 ETAA1Q9NY74 926 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 RCAN3Q9UKA8 241 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 CUL7Q14999 1698 aa10.67□□□□□ -0.7
COMMD3-215ENST00000602574 ERICH4A6NGS2 130 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 DDIT3P35638 169 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 MAGEA8P43361 318 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 KLHL40Q2TBA0 621 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 CLEC17AQ6ZS10 378 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 TOMM22Q9NS69 142 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 PLEKHG2Q9H7P9 1386 aa10.66□□□□□ -0.7
COMMD3-215ENST00000602574 SUPT6HQ7KZ85 1726 aaKnown RBP10.65□□□□□ -0.7
COMMD3-215ENST00000602574 GOLGA6CA6NDK9 693 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 GOLGA6BA6NDN3 693 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 GOLGA6DP0CG33 693 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 SETSIPP0DME0 302 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 SRPK2P78362 688 aaKnown RBP10.65□□□□□ -0.7
COMMD3-215ENST00000602574 TMX1Q9H3N1 280 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 GOLGA6AQ9NYA3 693 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 ROCK2O75116 1388 aaKnown RBP10.65□□□□□ -0.7
COMMD3-215ENST00000602574 MAGEA9P43362 315 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 ADCY2Q08462 1091 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 TATDN2Q93075 761 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 KIF1BPQ96EK5 621 aa10.65□□□□□ -0.7
COMMD3-215ENST00000602574 CPP00450 1065 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 ADRA2BP18089 450 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 PIAS4Q8N2W9 510 aaPredicted RBP10.64□□□□□ -0.71
COMMD3-215ENST00000602574 IQUBQ8NA54 791 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 LARP6Q9BRS8 491 aaKnown RBP10.64□□□□□ -0.71
COMMD3-215ENST00000602574 CCP110O43303 1012 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 ABCD1P33897 745 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 TRAF1Q13077 416 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 SRLQ86TD4 932 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 TSC1Q92574 1164 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 TBC1D32Q96NH3 1257 aa10.64□□□□□ -0.71
COMMD3-215ENST00000602574 EHBP1L1Q8N3D4 1523 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 TNNT1P13805 278 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 NCBP1Q09161 790 aaKnown RBP10.63□□□□□ -0.71
COMMD3-215ENST00000602574 HDGFL1Q5TGJ6 251 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 MORC1Q86VD1 984 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 NLRP13Q86W25 1043 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 STAG1Q8WVM7 1258 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 EIF4G2P78344 907 aaKnown RBP eCLIP10.63□□□□□ -0.71
COMMD3-215ENST00000602574 SLFNL1Q499Z3 407 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 NFATC2IPQ8NCF5 419 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 RANBP17Q9H2T7 1088 aaKnown RBP10.63□□□□□ -0.71
COMMD3-215ENST00000602574 CEP126Q9P2H0 1117 aa10.63□□□□□ -0.71
COMMD3-215ENST00000602574 IL16Q14005 1332 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 PPFIA2O75334 1257 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 GYS2P54840 703 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 SYT10Q6XYQ8 523 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 C10orf67Q8IYJ2 551 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 NECTIN2Q92692 538 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 TCOF1Q13428 1488 aaKnown RBP10.62□□□□□ -0.71
COMMD3-215ENST00000602574 SPAG9O60271 1321 aaKnown RBP10.62□□□□□ -0.71
COMMD3-215ENST00000602574 NAIPQ13075 1403 aa10.62□□□□□ -0.71
COMMD3-215ENST00000602574 MMS22LQ6ZRQ5 1243 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 TRERF1Q96PN7 1200 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 MAPK8IP3Q9UPT6 1336 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 DHX29Q7Z478 1369 aaKnown RBP10.61□□□□□ -0.71
COMMD3-215ENST00000602574 CCDC7Q96M83 1385 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 YEATS2Q9ULM3 1422 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 RBM5P52756 815 aaKnown RBP eCLIP10.61□□□□□ -0.71
COMMD3-215ENST00000602574 ZNF397Q8NF99 534 aaPredicted RBP10.61□□□□□ -0.71
COMMD3-215ENST00000602574 PHF8Q9UPP1 1060 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 KDM2AQ9Y2K7 1162 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 CARMIL1Q5VZK9 1371 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 MIA2Q96PC5 1412 aa10.61□□□□□ -0.71
COMMD3-215ENST00000602574 ZMYM4Q5VZL5 1548 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 FOXD4L6Q3SYB3 417 aaPredicted RBP10.6□□□□□ -0.71
COMMD3-215ENST00000602574 TEX35Q5T0J7 233 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 WWC2Q6AWC2 1192 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 FOXD4L3Q6VB84 417 aaPredicted RBP10.6□□□□□ -0.71
COMMD3-215ENST00000602574 NUTM1Q86Y26 1132 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 FMNL3Q8IVF7 1028 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 JARID2Q92833 1246 aaPredicted RBP10.6□□□□□ -0.71
COMMD3-215ENST00000602574 FAM212AQ96EL1 285 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 SGSM2O43147 1006 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 RWDD2BP57060 319 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 ICA1Q05084 483 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 AP1ARQ63HQ0 302 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 SNRNP27Q8WVK2 155 aaKnown RBP10.6□□□□□ -0.71
COMMD3-215ENST00000602574 PPM1EQ8WY54 764 aa10.6□□□□□ -0.71
COMMD3-215ENST00000602574 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.6□□□□□ -0.71
COMMD3-215ENST00000602574 RIOK3O14730 519 aaKnown RBP10.59□□□□□ -0.71
COMMD3-215ENST00000602574 SART3Q15020 963 aaKnown RBP10.59□□□□□ -0.71
COMMD3-215ENST00000602574 RAB3GAP1Q15042 981 aa10.59□□□□□ -0.71
COMMD3-215ENST00000602574 PDCD2Q16342 344 aaPredicted RBP10.59□□□□□ -0.71
COMMD3-215ENST00000602574 AMOTQ4VCS5 1084 aa10.59□□□□□ -0.71
COMMD3-215ENST00000602574 FAXDC2Q96IV6 333 aa10.59□□□□□ -0.71
COMMD3-215ENST00000602574 LRPPRCP42704 1394 aaKnown RBP10.59□□□□□ -0.71
COMMD3-215ENST00000602574 ARHGEF11O15085 1522 aa10.59□□□□□ -0.71
COMMD3-215ENST00000602574 KINO60870 393 aaKnown RBP10.59□□□□□ -0.71
COMMD3-215ENST00000602574 CCDC30Q5VVM6 783 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms