RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 OVOS2A0A0G2JMS6 1433 aa7.44□□□□□ -1.22
VRK3-226ENST00000602029 OVOS2A0A0J9YW53 1432 aa7.44□□□□□ -1.22
VRK3-226ENST00000602029 OVOS2Q6IE36 1432 aa7.44□□□□□ -1.22
VRK3-226ENST00000602029 PHRF1Q9P1Y6 1649 aaKnown RBP7.43□□□□□ -1.22
VRK3-226ENST00000602029 CABP1Q9NZU7 370 aa7.43□□□□□ -1.22
VRK3-226ENST00000602029 ATF5Q9Y2D1 282 aaPredicted RBP7.43□□□□□ -1.22
VRK3-226ENST00000602029 PEAK1Q9H792 1746 aa7.43□□□□□ -1.22
VRK3-226ENST00000602029 CRB1P82279 1406 aa7.43□□□□□ -1.22
VRK3-226ENST00000602029 PLEKHG3A1L390 1219 aa7.42□□□□□ -1.22
VRK3-226ENST00000602029 ZEB1P37275 1124 aaPredicted RBP7.42□□□□□ -1.22
VRK3-226ENST00000602029 NBPF1Q3BBV0 1214 aa7.42□□□□□ -1.22
VRK3-226ENST00000602029 STK32BQ9NY57 414 aa7.42□□□□□ -1.22
VRK3-226ENST00000602029 POLR3AO14802 1390 aaPredicted RBP7.42□□□□□ -1.22
VRK3-226ENST00000602029 ARHGEF28Q8N1W1 1705 aaKnown RBP7.41□□□□□ -1.22
VRK3-226ENST00000602029 PCNTO95613 3336 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 SLC34A2O95436 690 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 NEUROD1Q13562 356 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 PTF1AQ7RTS3 328 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 POTEDQ86YR6 584 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 PELP1Q8IZL8 1130 aaKnown RBP7.41□□□□□ -1.22
VRK3-226ENST00000602029 SGIP1Q9BQI5 828 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 EVC2Q86UK5 1308 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 CPDO75976 1380 aa7.41□□□□□ -1.22
VRK3-226ENST00000602029 COL5A2P05997 1499 aaPredicted RBP7.41□□□□□ -1.22
VRK3-226ENST00000602029 EXOC5O00471 708 aa7.4□□□□□ -1.22
VRK3-226ENST00000602029 HSPA6P17066 643 aa7.4□□□□□ -1.22
VRK3-226ENST00000602029 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.4□□□□□ -1.22
VRK3-226ENST00000602029 PCGF6Q9BYE7 350 aa7.4□□□□□ -1.22
VRK3-226ENST00000602029 NLRP2Q9NX02 1062 aa7.4□□□□□ -1.22
VRK3-226ENST00000602029 USP19O94966 1318 aa7.4□□□□□ -1.22
VRK3-226ENST00000602029 PARP4Q9UKK3 1724 aaKnown RBP7.4□□□□□ -1.23
VRK3-226ENST00000602029 COL13A1Q5TAT6 717 aaPredicted RBP7.39□□□□□ -1.23
VRK3-226ENST00000602029 KCNH5Q8NCM2 988 aa7.39□□□□□ -1.23
VRK3-226ENST00000602029 TMC1Q8TDI8 760 aa7.39□□□□□ -1.23
VRK3-226ENST00000602029 ACSBG1Q96GR2 724 aa7.39□□□□□ -1.23
VRK3-226ENST00000602029 CDCA7Q9BWT1 371 aaPredicted RBP7.39□□□□□ -1.23
VRK3-226ENST00000602029 COL24A1Q17RW2 1714 aa7.38□□□□□ -1.23
VRK3-226ENST00000602029 USP6P35125 1406 aa7.38□□□□□ -1.23
VRK3-226ENST00000602029 ROCK2O75116 1388 aaKnown RBP7.38□□□□□ -1.23
VRK3-226ENST00000602029 AATKQ6ZMQ8 1374 aa7.38□□□□□ -1.23
VRK3-226ENST00000602029 WDR17Q8IZU2 1322 aa7.38□□□□□ -1.23
VRK3-226ENST00000602029 PROM2Q8N271 834 aa7.38□□□□□ -1.23
VRK3-226ENST00000602029 KTN1Q86UP2 1357 aaKnown RBP7.37□□□□□ -1.23
VRK3-226ENST00000602029 TUBGCP6Q96RT7 1819 aa7.37□□□□□ -1.23
VRK3-226ENST00000602029 GPR162Q16538 588 aa7.37□□□□□ -1.23
VRK3-226ENST00000602029 TXNRD1Q16881 649 aa7.37□□□□□ -1.23
VRK3-226ENST00000602029 MARCH10Q8NA82 808 aaPredicted RBP7.37□□□□□ -1.23
VRK3-226ENST00000602029 SYTL4Q96C24 671 aaPredicted RBP7.37□□□□□ -1.23
VRK3-226ENST00000602029 TOPAZ1Q8N9V7 1692 aa7.37□□□□□ -1.23
VRK3-226ENST00000602029 CPSF1Q10570 1443 aaKnown RBP7.36□□□□□ -1.23
VRK3-226ENST00000602029 ATP10DQ9P241 1426 aa7.36□□□□□ -1.23
VRK3-226ENST00000602029 WNK3Q9BYP7 1800 aa7.36□□□□□ -1.23
VRK3-226ENST00000602029 BRD4O60885 1362 aaPredicted RBP7.36□□□□□ -1.23
VRK3-226ENST00000602029 TTC21BQ7Z4L5 1316 aa7.36□□□□□ -1.23
VRK3-226ENST00000602029 PLSCR1O15162 318 aa7.36□□□□□ -1.23
VRK3-226ENST00000602029 HDGFL2Q7Z4V5 671 aaPredicted RBP7.36□□□□□ -1.23
VRK3-226ENST00000602029 LTV1Q96GA3 475 aaPredicted RBP7.36□□□□□ -1.23
VRK3-226ENST00000602029 ZNF692Q9BU19 519 aaPredicted RBP7.36□□□□□ -1.23
VRK3-226ENST00000602029 AXIN2Q9Y2T1 843 aa7.36□□□□□ -1.23
VRK3-226ENST00000602029 AKAP12Q02952 1782 aa7.36□□□□□ -1.23
VRK3-226ENST00000602029 CCDC7Q96M83 1385 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 LMO7Q8WWI1 1683 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 QRICH2Q9H0J4 1663 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 LRRC37A3O60309 1634 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 SLC15A2Q16348 729 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 DDX54Q8TDD1 881 aaKnown RBP7.35□□□□□ -1.23
VRK3-226ENST00000602029 L3MBTL2Q969R5 705 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 CARD10Q9BWT7 1032 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 MTFR1LQ9H019 292 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 KAT6BQ8WYB5 2073 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 WDR90Q96KV7 1748 aa7.35□□□□□ -1.23
VRK3-226ENST00000602029 PAPPAQ13219 1627 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 MAP3K5Q99683 1374 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 TTC21AQ8NDW8 1320 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 IL2RBP14784 551 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 POLD1P28340 1107 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 PRELPP51888 382 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 ARHGEF25Q86VW2 580 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 DNAJC5GQ8N7S2 189 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 ARXQ96QS3 562 aa7.34□□□□□ -1.23
VRK3-226ENST00000602029 SLIT3O75094 1523 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 YBX3P16989 372 aaKnown RBP eCLIP7.33□□□□□ -1.245e-7■■□□□ 11.5
VRK3-226ENST00000602029 NME9Q86XW9 330 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 NLGN2Q8NFZ4 835 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 ANKRD24Q8TF21 1146 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 SIN3AQ96ST3 1273 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 CARD11Q9BXL7 1154 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 TFCP2L1Q9NZI6 479 aa7.33□□□□□ -1.24
VRK3-226ENST00000602029 KIAA1210Q9ULL0 1709 aa7.32□□□□□ -1.24
VRK3-226ENST00000602029 TERF2IPQ9NYB0 399 aa7.32□□□□□ -1.24
VRK3-226ENST00000602029 TNS2Q63HR2 1409 aa7.32□□□□□ -1.24
VRK3-226ENST00000602029 QSER1Q2KHR3 1735 aa7.32□□□□□ -1.24
VRK3-226ENST00000602029 PIK3C2AO00443 1686 aa7.32□□□□□ -1.24
VRK3-226ENST00000602029 TRPM1Q7Z4N2 1603 aa7.31□□□□□ -1.24
VRK3-226ENST00000602029 AMPHP49418 695 aa7.31□□□□□ -1.24
VRK3-226ENST00000602029 ZNF526Q8TF50 670 aaPredicted RBP7.31□□□□□ -1.24
VRK3-226ENST00000602029 ADCY9O60503 1353 aa7.31□□□□□ -1.24
VRK3-226ENST00000602029 ERBB3P21860 1342 aa7.3□□□□□ -1.24
VRK3-226ENST00000602029 KCNQ4P56696 695 aa7.3□□□□□ -1.24
VRK3-226ENST00000602029 TNS4Q8IZW8 715 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms