RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 NRXN3Q9Y4C0 1643 aa25.5■■□□□ 1.67
SHKBP1-225ENST00000600733 MRPL50Q8N5N7 158 aaKnown RBP25.49■■□□□ 1.67
SHKBP1-225ENST00000600733 RRS1Q15050 365 aaKnown RBP25.48■■□□□ 1.67
SHKBP1-225ENST00000600733 MBIPQ9NS73 344 aa25.48■■□□□ 1.67
SHKBP1-225ENST00000600733 C1orf115Q9H7X2 142 aa25.48■■□□□ 1.67
SHKBP1-225ENST00000600733 CDK12Q9NYV4 1490 aaPredicted RBP25.48■■□□□ 1.67
SHKBP1-225ENST00000600733 ZBTB7BO15156 539 aaPredicted RBP25.47■■□□□ 1.67
SHKBP1-225ENST00000600733 CHD1LQ86WJ1 897 aa25.47■■□□□ 1.67
SHKBP1-225ENST00000600733 IFT57Q9NWB7 429 aa25.47■■□□□ 1.67
SHKBP1-225ENST00000600733 GNAI1P63096 354 aa25.47■■□□□ 1.67
SHKBP1-225ENST00000600733 CALD1Q05682 793 aaKnown RBP25.47■■□□□ 1.67
SHKBP1-225ENST00000600733 NUDT16Q96DE0 195 aaKnown RBP25.47■■□□□ 1.67
SHKBP1-225ENST00000600733 CPS1P31327 1500 aa25.46■■□□□ 1.67
SHKBP1-225ENST00000600733 ZNF853P0CG23 659 aa25.45■■□□□ 1.66
SHKBP1-225ENST00000600733 DLG5Q8TDM6 1919 aa25.45■■□□□ 1.66
SHKBP1-225ENST00000600733 COG3Q96JB2 828 aa25.44■■□□□ 1.66
SHKBP1-225ENST00000600733 PTCH1Q13635 1447 aa25.44■■□□□ 1.66
SHKBP1-225ENST00000600733 AATKQ6ZMQ8 1374 aa25.44■■□□□ 1.66
SHKBP1-225ENST00000600733 FAM83GA6ND36 823 aa25.43■■□□□ 1.66
SHKBP1-225ENST00000600733 ARHGAP45Q92619 1136 aa25.43■■□□□ 1.66
SHKBP1-225ENST00000600733 PIK3R4Q99570 1358 aa25.42■■□□□ 1.66
SHKBP1-225ENST00000600733 TWISTNBQ3B726 338 aaPredicted RBP25.42■■□□□ 1.66
SHKBP1-225ENST00000600733 CCDC61Q9Y6R9 512 aa25.42■■□□□ 1.66
SHKBP1-225ENST00000600733 ANKRD45Q5TZF3 282 aa25.42■■□□□ 1.66
SHKBP1-225ENST00000600733 C8orf58Q8NAV2 365 aa25.42■■□□□ 1.66
SHKBP1-225ENST00000600733 MON2Q7Z3U7 1717 aa25.41■■□□□ 1.66
SHKBP1-225ENST00000600733 DCTN1Q14203 1278 aa25.4■■□□□ 1.66
SHKBP1-225ENST00000600733 CFAP44Q96MT7 982 aa25.4■■□□□ 1.66
SHKBP1-225ENST00000600733 ABCC4O15439 1325 aa25.4■■□□□ 1.66
SHKBP1-225ENST00000600733 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.39■■□□□ 1.66
SHKBP1-225ENST00000600733 SIRT2Q8IXJ6 389 aa25.39■■□□□ 1.65
SHKBP1-225ENST00000600733 LMOD3Q0VAK6 560 aa25.37■■□□□ 1.65
SHKBP1-225ENST00000600733 GCC1Q96CN9 775 aa25.37■■□□□ 1.65
SHKBP1-225ENST00000600733 BMP2KLQ5H9B9 411 aa25.37■■□□□ 1.65
SHKBP1-225ENST00000600733 PRR36Q9H6K5 1346 aa25.36■■□□□ 1.65
SHKBP1-225ENST00000600733 C3P01024 1663 aa25.36■■□□□ 1.65
SHKBP1-225ENST00000600733 HSCBQ8IWL3 235 aa25.36■■□□□ 1.65
SHKBP1-225ENST00000600733 CHMP4BQ9H444 224 aaKnown RBP25.36■■□□□ 1.65
SHKBP1-225ENST00000600733 RBM25P49756 843 aaKnown RBP25.35■■□□□ 1.65
SHKBP1-225ENST00000600733 AKAP12Q02952 1782 aa25.35■■□□□ 1.65
SHKBP1-225ENST00000600733 ITSN1Q15811 1721 aa25.35■■□□□ 1.65
SHKBP1-225ENST00000600733 KNDC1Q76NI1 1749 aa25.34■■□□□ 1.65
SHKBP1-225ENST00000600733 CHMP5Q9NZZ3 219 aa25.34■■□□□ 1.65
SHKBP1-225ENST00000600733 AEBP1Q8IUX7 1158 aa25.34■■□□□ 1.65
SHKBP1-225ENST00000600733 TECPR2O15040 1411 aa25.33■■□□□ 1.65
SHKBP1-225ENST00000600733 MCM4P33991 863 aa25.33■■□□□ 1.64
SHKBP1-225ENST00000600733 ESF1Q9H501 851 aaKnown RBP25.33■■□□□ 1.64
SHKBP1-225ENST00000600733 ZNF692Q9BU19 519 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-225ENST00000600733 API5Q9BZZ5 524 aaKnown RBP25.3■■□□□ 1.64
SHKBP1-225ENST00000600733 SIRT1Q96EB6 747 aa25.3■■□□□ 1.64
SHKBP1-225ENST00000600733 ROBO2Q9HCK4 1378 aa25.29■■□□□ 1.64
SHKBP1-225ENST00000600733 EIF4A2Q14240 407 aaKnown RBP25.29■■□□□ 1.64
SHKBP1-225ENST00000600733 SULT6B1Q6IMI4 303 aa25.29■■□□□ 1.64
SHKBP1-225ENST00000600733 KRT24Q2M2I5 525 aa25.29■■□□□ 1.64
SHKBP1-225ENST00000600733 NUTM2FA1L443 756 aa25.28■■□□□ 1.64
SHKBP1-225ENST00000600733 TBC1D9Q6ZT07 1266 aa25.28■■□□□ 1.64
SHKBP1-225ENST00000600733 NCOA3Q9Y6Q9 1424 aa25.27■■□□□ 1.64
SHKBP1-225ENST00000600733 NRKQ7Z2Y5 1582 aa25.27■■□□□ 1.64
SHKBP1-225ENST00000600733 HDGFP51858 240 aaKnown RBP25.26■■□□□ 1.63
SHKBP1-225ENST00000600733 SNX21Q969T3 373 aa25.26■■□□□ 1.63
SHKBP1-225ENST00000600733 KIF2CQ99661 725 aa25.26■■□□□ 1.63
SHKBP1-225ENST00000600733 TTC21BQ7Z4L5 1316 aa25.25■■□□□ 1.63
SHKBP1-225ENST00000600733 GZF1Q9H116 711 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-225ENST00000600733 MCM10Q7L590 875 aa25.24■■□□□ 1.63
SHKBP1-225ENST00000600733 ARXQ96QS3 562 aa25.24■■□□□ 1.63
SHKBP1-225ENST00000600733 TNRQ92752 1358 aa25.24■■□□□ 1.63
SHKBP1-225ENST00000600733 ACEP12821 1306 aa25.24■■□□□ 1.63
SHKBP1-225ENST00000600733 DDIT3P35638 169 aa25.24■■□□□ 1.63
SHKBP1-225ENST00000600733 TMEM2Q9UHN6 1383 aa25.24■■□□□ 1.63
SHKBP1-225ENST00000600733 HSP90AB2PQ58FF8 381 aa25.22■■□□□ 1.63
SHKBP1-225ENST00000600733 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.22■■□□□ 1.63
SHKBP1-225ENST00000600733 CD2BP2O95400 341 aaKnown RBP25.21■■□□□ 1.63
SHKBP1-225ENST00000600733 SOX12O15370 315 aa25.21■■□□□ 1.63
SHKBP1-225ENST00000600733 TRAK2O60296 914 aa25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 HSP90AB1P08238 724 aaKnown RBP25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 GSPT1P15170 499 aaKnown RBP25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 L1TD1Q5T7N2 865 aaKnown RBP25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 INTS3Q68E01 1043 aaKnown RBP25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 OVOS2A0A0J9YW53 1432 aa25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 OVOS2Q6IE36 1432 aa25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 ADAMTS13Q76LX8 1427 aa25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 UBR1Q8IWV7 1749 aa25.2■■□□□ 1.63
SHKBP1-225ENST00000600733 RGS12O14924 1447 aa25.2■■□□□ 1.62
SHKBP1-225ENST00000600733 CHL1O00533 1208 aa25.2■■□□□ 1.62
SHKBP1-225ENST00000600733 KIF24Q5T7B8 1368 aa25.19■■□□□ 1.62
SHKBP1-225ENST00000600733 DCTPP1Q9H773 170 aa25.19■■□□□ 1.62
SHKBP1-225ENST00000600733 PEAK1Q9H792 1746 aa25.19■■□□□ 1.62
SHKBP1-225ENST00000600733 PLEKHM2Q8IWE5 1019 aa25.19■■□□□ 1.62
SHKBP1-225ENST00000600733 RBM42Q9BTD8 480 aaKnown RBP25.19■■□□□ 1.62
SHKBP1-225ENST00000600733 ANO8Q9HCE9 1232 aaPredicted RBP25.17■■□□□ 1.62
SHKBP1-225ENST00000600733 CDC45O75419 566 aa25.17■■□□□ 1.62
SHKBP1-225ENST00000600733 TOPAZ1Q8N9V7 1692 aa25.17■■□□□ 1.62
SHKBP1-225ENST00000600733 C16orf71Q8IYS4 520 aaPredicted RBP25.16■■□□□ 1.62
SHKBP1-225ENST00000600733 USP6P35125 1406 aa25.16■■□□□ 1.62
SHKBP1-225ENST00000600733 ATP10DQ9P241 1426 aa25.16■■□□□ 1.62
SHKBP1-225ENST00000600733 LTKP29376 864 aa25.15■■□□□ 1.62
SHKBP1-225ENST00000600733 FOXD4L1Q9NU39 408 aa25.15■■□□□ 1.62
SHKBP1-225ENST00000600733 MSH6P52701 1360 aa25.15■■□□□ 1.62
SHKBP1-225ENST00000600733 PLEKHG3A1L390 1219 aa25.15■■□□□ 1.62
SHKBP1-225ENST00000600733 GOLGA6L3A6NEY3 463 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms