RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 DDX17Q92841 729 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-224ENST00000600718 RRP7AQ9Y3A4 280 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-224ENST00000600718 RTL1A6NKG5 1358 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 GCP02774 474 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 HMOX1P09601 288 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 HOXC9P31274 260 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 SLIT3O75094 1523 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 NFAT5O94916 1531 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 TMPOP42166 694 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 SLFN5Q08AF3 891 aa23.18■■□□□ 1.3
SHKBP1-224ENST00000600718 ALS2Q96Q42 1657 aa23.17■■□□□ 1.3
SHKBP1-224ENST00000600718 PXDNQ92626 1479 aa23.17■■□□□ 1.3
SHKBP1-224ENST00000600718 NEFLP07196 543 aa23.17■■□□□ 1.3
SHKBP1-224ENST00000600718 WDR63Q8IWG1 891 aa23.16■■□□□ 1.3
SHKBP1-224ENST00000600718 TRMT2AQ8IZ69 625 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-224ENST00000600718 IP6K1Q92551 441 aa23.16■■□□□ 1.3
SHKBP1-224ENST00000600718 E9PSI1 815 aa23.15■■□□□ 1.3
SHKBP1-224ENST00000600718 SPATA31A3Q5VYP0 1347 aa23.15■■□□□ 1.3
SHKBP1-224ENST00000600718 TNS3Q68CZ2 1445 aa23.14■■□□□ 1.29
SHKBP1-224ENST00000600718 DUSP27Q5VZP5 1158 aa23.14■■□□□ 1.29
SHKBP1-224ENST00000600718 ARHGEF10O15013 1369 aa23.13■■□□□ 1.29
SHKBP1-224ENST00000600718 LTBP4Q8N2S1 1624 aa23.13■■□□□ 1.29
SHKBP1-224ENST00000600718 SULT6B1Q6IMI4 303 aa23.12■■□□□ 1.29
SHKBP1-224ENST00000600718 ARHGEF25Q86VW2 580 aa23.12■■□□□ 1.29
SHKBP1-224ENST00000600718 SOS2Q07890 1332 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-224ENST00000600718 RGPD1P0DJD0 1748 aa23.11■■□□□ 1.29
SHKBP1-224ENST00000600718 RIPK4P57078 832 aa23.11■■□□□ 1.29
SHKBP1-224ENST00000600718 PHACTR3Q96KR7 559 aa23.11■■□□□ 1.29
SHKBP1-224ENST00000600718 NFE2L2Q16236 605 aa23.1■■□□□ 1.29
SHKBP1-224ENST00000600718 TRIM35Q9UPQ4 493 aa23.1■■□□□ 1.29
SHKBP1-224ENST00000600718 PHRF1Q9P1Y6 1649 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-224ENST00000600718 LTN1O94822 1766 aa23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 EYA1Q99502 592 aa23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 SPINK5Q9NQ38 1064 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 RCAN3Q9UKA8 241 aa23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 IGSF1Q8N6C5 1336 aa23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 FKBP8Q14318 412 aa23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 AEBP1Q8IUX7 1158 aa23.09■■□□□ 1.29
SHKBP1-224ENST00000600718 MED1Q15648 1581 aaPredicted RBP23.08■■□□□ 1.28
SHKBP1-224ENST00000600718 RNF123Q5XPI4 1314 aa23.07■■□□□ 1.28
SHKBP1-224ENST00000600718 PLEKHG5O94827 1062 aa23.07■■□□□ 1.28
SHKBP1-224ENST00000600718 ZBTB7CA1YPR0 619 aa23.06■■□□□ 1.28
SHKBP1-224ENST00000600718 KDRP35968 1356 aa23.06■■□□□ 1.28
SHKBP1-224ENST00000600718 IL16Q14005 1332 aa23.05■■□□□ 1.28
SHKBP1-224ENST00000600718 LTV1Q96GA3 475 aaPredicted RBP23.05■■□□□ 1.28
SHKBP1-224ENST00000600718 LMOD3Q0VAK6 560 aa23.03■■□□□ 1.28
SHKBP1-224ENST00000600718 MYH16Q9H6N6 1097 aa23.03■■□□□ 1.28
SHKBP1-224ENST00000600718 NHSL1Q5SYE7 1610 aa23.02■■□□□ 1.28
SHKBP1-224ENST00000600718 ZC3H6P61129 1189 aaKnown RBP23.01■■□□□ 1.27
SHKBP1-224ENST00000600718 CALD1Q05682 793 aaKnown RBP23■■□□□ 1.27
SHKBP1-224ENST00000600718 CABLES1Q8TDN4 633 aa23■■□□□ 1.27
SHKBP1-224ENST00000600718 AEBP2Q6ZN18 517 aaPredicted RBP23■■□□□ 1.27
SHKBP1-224ENST00000600718 ERICH6BQ5W0A0 696 aa22.99■■□□□ 1.27
SHKBP1-224ENST00000600718 ANKRD24Q8TF21 1146 aa22.98■■□□□ 1.27
SHKBP1-224ENST00000600718 AXIN2Q9Y2T1 843 aa22.98■■□□□ 1.27
SHKBP1-224ENST00000600718 CPDO75976 1380 aa22.98■■□□□ 1.27
SHKBP1-224ENST00000600718 CRYBG1Q9Y4K1 1723 aa22.97■■□□□ 1.27
SHKBP1-224ENST00000600718 NBPF6Q5VWK0 638 aa22.97■■□□□ 1.27
SHKBP1-224ENST00000600718 NBPF4Q96M43 638 aa22.97■■□□□ 1.27
SHKBP1-224ENST00000600718 RRP1P56182 461 aaKnown RBP22.96■■□□□ 1.27
SHKBP1-224ENST00000600718 IRX6P78412 446 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-224ENST00000600718 GAS2L2Q8NHY3 880 aa22.95■■□□□ 1.26
SHKBP1-224ENST00000600718 ABCC6O95255 1503 aa22.95■■□□□ 1.26
SHKBP1-224ENST00000600718 MTHFSDQ2M296 383 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-224ENST00000600718 ROBO1Q9Y6N7 1651 aa22.93■■□□□ 1.26
SHKBP1-224ENST00000600718 LRRC59Q96AG4 307 aaKnown RBP22.93■■□□□ 1.26
SHKBP1-224ENST00000600718 KIAA0232Q92628 1395 aa22.92■■□□□ 1.26
SHKBP1-224ENST00000600718 USHBP1Q8N6Y0 703 aa22.92■■□□□ 1.26
SHKBP1-224ENST00000600718 ERBB3P21860 1342 aa22.92■■□□□ 1.26
SHKBP1-224ENST00000600718 FANCIQ9NVI1 1328 aa22.92■■□□□ 1.26
SHKBP1-224ENST00000600718 NCAPD2Q15021 1401 aa22.91■■□□□ 1.26
SHKBP1-224ENST00000600718 TOM1O60784 492 aa22.91■■□□□ 1.26
SHKBP1-224ENST00000600718 HAP1P54257 671 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-224ENST00000600718 AHDC1Q5TGY3 1603 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-224ENST00000600718 DLG5Q8TDM6 1919 aa22.91■■□□□ 1.26
SHKBP1-224ENST00000600718 GNAI1P63096 354 aa22.9■■□□□ 1.26
SHKBP1-224ENST00000600718 IFT57Q9NWB7 429 aa22.9■■□□□ 1.26
SHKBP1-224ENST00000600718 COL18A1P39060 1754 aa22.9■■□□□ 1.26
SHKBP1-224ENST00000600718 HTATSF1O43719 755 aaKnown RBP22.9■■□□□ 1.26
SHKBP1-224ENST00000600718 CT47B1P0C2W7 299 aaPredicted RBP22.9■■□□□ 1.26
SHKBP1-224ENST00000600718 THUMPD2Q9BTF0 503 aaKnown RBP22.9■■□□□ 1.26
SHKBP1-224ENST00000600718 TSR2Q969E8 191 aaKnown RBP22.89■■□□□ 1.26
SHKBP1-224ENST00000600718 FAM83GA6ND36 823 aa22.89■■□□□ 1.25
SHKBP1-224ENST00000600718 CHRNA2Q15822 529 aa22.89■■□□□ 1.25
SHKBP1-224ENST00000600718 ZNF853P0CG23 659 aa22.88■■□□□ 1.25
SHKBP1-224ENST00000600718 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-224ENST00000600718 RTF1Q92541 710 aaKnown RBP22.87■■□□□ 1.25
SHKBP1-224ENST00000600718 CFAP44Q96MT7 982 aa22.87■■□□□ 1.25
SHKBP1-224ENST00000600718 PRDM11Q9NQV5 511 aa22.87■■□□□ 1.25
SHKBP1-224ENST00000600718 DCTN1Q14203 1278 aa22.87■■□□□ 1.25
SHKBP1-224ENST00000600718 LAS1LQ9Y4W2 734 aaKnown RBP22.87■■□□□ 1.25
SHKBP1-224ENST00000600718 CAMTA1Q9Y6Y1 1673 aa22.86■■□□□ 1.25
SHKBP1-224ENST00000600718 EXOSC9Q06265 439 aaKnown RBP22.86■■□□□ 1.25
SHKBP1-224ENST00000600718 RGPD5Q99666 1765 aa22.86■■□□□ 1.25
SHKBP1-224ENST00000600718 RGPD2P0DJD1 1756 aa22.85■■□□□ 1.25
SHKBP1-224ENST00000600718 GNAT3A8MTJ3 354 aa22.85■■□□□ 1.25
SHKBP1-224ENST00000600718 CSB-PGBD3P0DP91 1061 aa22.84■■□□□ 1.25
SHKBP1-224ENST00000600718 AMOTQ4VCS5 1084 aa22.84■■□□□ 1.25
SHKBP1-224ENST00000600718 PLEKHO1Q53GL0 409 aaPredicted RBP22.84■■□□□ 1.25
SHKBP1-224ENST00000600718 MCM10Q7L590 875 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms